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RORC RAR related orphan receptor C [ Pan troglodytes (chimpanzee) ]

Gene ID: 457303, updated on 3-Apr-2024

Summary

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Official Symbol
RORCprovided by VGNC
Official Full Name
RAR related orphan receptor Cprovided by VGNC
Primary source
VGNC:VGNC:49010
Locus tag
CK820_G0047036
See related
Ensembl:ENSPTRG00000032436
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RORC in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (97373495..97400021)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (133951346..133976240, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808776 Neighboring gene thioesterase superfamily member 5 Neighboring gene C2 calcium dependent domain containing 4D Neighboring gene leucine rich repeat and Ig domain containing 4 Neighboring gene uncharacterized LOC134808777 Neighboring gene tudor and KH domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxysterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    97373495..97400021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054686439.2 → XP_054542414.1  nuclear receptor ROR-gamma isoform X6

  2. XM_003308388.4 → XP_003308436.1  nuclear receptor ROR-gamma isoform X5

    UniProtKB/TrEMBL
    A0A2I3T288, A0A2J8JJS4, A0A6D2WPB6, H2RAL9
    Related
    ENSPTRP00000054088.3
    Conserved Domains (2) summary
    cd06939
    Location:268 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_003308391.6 → XP_003308439.3  nuclear receptor ROR-gamma isoform X4

  4. XM_063797439.1 → XP_063653509.1  nuclear receptor ROR-gamma isoform X3

  5. XM_054686433.2 → XP_054542408.1  nuclear receptor ROR-gamma isoform X2

  6. XM_003308389.6 → XP_003308437.1  nuclear receptor ROR-gamma isoform X1

    See identical proteins and their annotated locations for XP_003308437.1

    UniProtKB/TrEMBL
    A0A2I3RWX6, A0A2I3S3D1, A0A2J8JJS8, A0A6D2XDU6
    Related
    ENSPTRP00000071342.1
    Conserved Domains (2) summary
    cd06939
    Location:247 → 485
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:4 → 97
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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