FAF1 Fas associated factor 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: FAF1provided by VGNC
Official Full Name: Fas associated factor 1provided by VGNC
Primary source: VGNC:VGNC:6815
Locus tag: CK820_G0010673
See related: Ensembl:ENSPTRG00000000725
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	1	NC_072398.2 (180062493..180583220)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	1	NC_072398.1 (50716083..51236429, complement)

Chromosome 1 - NC_072398.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Cda1kd05 (e-PCR)
- UniSTS:57664

G20519 (e-PCR)
- UniSTS:44611

A005U39 (e-PCR)
- UniSTS:44612

SHGC-74801 (e-PCR)
- UniSTS:42579

AL009799 (e-PCR)
- UniSTS:48991

D1S427 (e-PCR), detects polymorphism
- UniSTS:26209

SHGC-74798 (e-PCR)
- UniSTS:34428

D1S1452 (e-PCR)
- UniSTS:149648

SHGC-111441 (e-PCR)
- UniSTS:181912

RH66672 (e-PCR)
- UniSTS:57510

G16233 (e-PCR)
- UniSTS:64447

RH67781 (e-PCR)
- UniSTS:72937

G16279 (e-PCR)
- UniSTS:36345

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables NF-kappaB binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ubiquitin binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: FAS-associated factor 1

Names: Fas (TNFRSF6) associated factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

180062493..180583220

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001137725.6 → XP_001137725.1 FAS-associated factor 1 isoform X2

See identical proteins and their annotated locations for XP_001137725.1

UniProtKB/TrEMBL

A0A2I3RFQ0, A0A2I3SXQ0, A0A2J8NIK5, A0A6D2XGD2

Related

ENSPTRP00000081765.1

Conserved Domains (6) summary

cd02990
Location:352 → 487

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:14 → 46

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:571 → 649

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:195 → 268

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:100 → 172

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:490 → 598

Mitofilin; Mitochondrial inner membrane protein
XM_054666796.2 → XP_054522771.1 FAS-associated factor 1 isoform X1
XM_063780489.1 → XP_063636559.1 FAS-associated factor 1 isoform X3
XM_063780492.1 → XP_063636562.1 FAS-associated factor 1 isoform X4