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TAF12 TATA-box binding protein associated factor 12 [ Pan troglodytes (chimpanzee) ]

Gene ID: 456686, updated on 29-Mar-2024

Summary

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Official Symbol
TAF12provided by VGNC
Official Full Name
TATA-box binding protein associated factor 12provided by VGNC
Primary source
VGNC:VGNC:7001
Locus tag
CK820_G0048724
See related
Ensembl:ENSPTRG00000000437
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (202332970..202378122)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (28921172..28966357, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene glucocorticoid modulatory element binding protein 1 Neighboring gene small Cajal body-specific RNA 24 Neighboring gene U11 spliceosomal RNA Neighboring gene uncharacterized LOC104006986 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene RAB42, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 12
Names
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    202332970..202378122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016957482.4 → XP_016812971.1  transcription initiation factor TFIID subunit 12 isoform X3

    Conserved Domains (1) summary
    cd07981
    Location:95 → 166
    TAF12; TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

  2. XM_513257.8 → XP_513257.2  transcription initiation factor TFIID subunit 12 isoform X2

    See identical proteins and their annotated locations for XP_513257.2

    UniProtKB/TrEMBL
    A0A2I3RRS5, A0A2J8JCP2, A0A6D2WDU6
    Conserved Domains (1) summary
    cd07981
    Location:58 → 126
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

  3. XM_001153380.6 → XP_001153380.1  transcription initiation factor TFIID subunit 12 isoform X2

    See identical proteins and their annotated locations for XP_001153380.1

    UniProtKB/TrEMBL
    A0A2I3RRS5, A0A2J8JCP2, A0A6D2WDU6
    Conserved Domains (1) summary
    cd07981
    Location:58 → 126
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

  4. XM_009452020.4 → XP_009450295.1  transcription initiation factor TFIID subunit 12 isoform X2

    See identical proteins and their annotated locations for XP_009450295.1

    UniProtKB/TrEMBL
    A0A2I3RRS5, A0A2J8JCP2, A0A6D2WDU6
    Related
    ENSPTRP00000067384.1
    Conserved Domains (1) summary
    cd07981
    Location:58 → 126
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

  5. XM_009452011.5 → XP_009450286.1  transcription initiation factor TFIID subunit 12 isoform X1

    See identical proteins and their annotated locations for XP_009450286.1

    UniProtKB/TrEMBL
    H2PYH5
    Related
    ENSPTRP00000000760.5
    Conserved Domains (1) summary
    cd07981
    Location:110 → 178
    TAF12; TATA Binding Protein (TBP) Associated Factor 12
Nucleotide Protein
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