SLC9A1 solute carrier family 9 member A1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SLC9A1provided by VGNC
Official Full Name: solute carrier family 9 member A1provided by VGNC
Primary source: VGNC:VGNC:58828
Locus tag: CK820_G0045774
See related: Ensembl:ENSPTRG00000051037
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	1	NC_072398.2 (203813535..203883921)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	1	NC_072398.1 (27415369..27474462, complement)

Chromosome 1 - NC_072398.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-74483 (e-PCR)
- UniSTS:24630

RH45589 (e-PCR)
- UniSTS:91198

SHGC-74507 (e-PCR)
- UniSTS:27270

AL009835 (e-PCR)
- UniSTS:10904

D1S3323 (e-PCR)
- UniSTS:54179

GDB:176410 (e-PCR)
- UniSTS:154806

GDB:549196 (e-PCR)
- UniSTS:157629

D1S1277 (e-PCR)
- UniSTS:149474

STS-R72385 (e-PCR)
- UniSTS:68594

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables potassium:proton antiporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables sodium:proton antiporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in potassium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in proton transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of intracellular pH	IEA Inferred from Electronic Annotation more info	PubMed
involved_in sodium ion import across plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: sodium/hydrogen exchanger 1

Names: solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive); solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

203813535..203883921

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063784001.1 → XP_063640071.1 sodium/hydrogen exchanger 1 isoform X1

UniProtKB/TrEMBL

A0A2J8JNV2, A0A6D2WNU1, K7CFV5
XM_016957102.4 → XP_016812591.1 sodium/hydrogen exchanger 1 isoform X1

UniProtKB/TrEMBL

A0A2J8JNV2, A0A6D2WNU1, K7B186, K7CFV5

Related

ENSPTRP00000067126.1

Conserved Domains (1) summary

TIGR00840
Location:95 → 660

b_cpa1; sodium/hydrogen exchanger 3
XM_016957108.3 → XP_016812597.1 sodium/hydrogen exchanger 1 isoform X2

UniProtKB/TrEMBL

K7B186

Conserved Domains (3) summary

TIGR00840
Location:5 → 550

b_cpa1; sodium/hydrogen exchanger 3

pfam00999
Location:19 → 393

Na_H_Exchanger; Sodium/hydrogen exchanger family

pfam16644
Location:492 → 590

NEXCaM_BD; Regulatory region of Na+/H+ exchanger NHE binds to calmodulin
XM_063784006.1 → XP_063640076.1 sodium/hydrogen exchanger 1 isoform X3
XM_063784005.1 → XP_063640075.1 sodium/hydrogen exchanger 1 isoform X3