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KDM1A lysine demethylase 1A [ Pan troglodytes (chimpanzee) ]

Gene ID: 456614, updated on 29-Mar-2024

Summary

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Official Symbol
KDM1Aprovided by VGNC
Official Full Name
lysine demethylase 1Aprovided by VGNC
Primary source
VGNC:VGNC:8065
Locus tag
CK820_G0041637
See related
Ensembl:ENSPTRG00000000321
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
AOF2; KDM1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (207937746..208001942, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (23297647..23361550)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene leucine zipper protein 1 Neighboring gene testis expressed 46 Neighboring gene lactamase beta like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific histone demethylase 1A
Names
amine oxidase (flavin containing) domain 2
lysine (K)-specific demethylase 1
lysine (K)-specific demethylase 1A
lysine-specific histone demethylase 1
XP_016811623.1
XP_016811631.1
XP_016811633.1
XP_063640938.1
XP_063640942.1
XP_063640943.1
XP_063640945.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    207937746..208001942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063784872.1 → XP_063640942.1  lysine-specific histone demethylase 1A isoform X5

  2. XM_063784873.1 → XP_063640943.1  lysine-specific histone demethylase 1A isoform X5

  3. XM_063784875.1 → XP_063640945.1  lysine-specific histone demethylase 1A isoform X6

  4. XM_016956142.4 → XP_016811631.1  lysine-specific histone demethylase 1A isoform X2

    UniProtKB/TrEMBL
    A0A2I3RC03, A0A2J8K428, A0A2J8K479, A0A6D2XJD3, A0A6D2XTK5, H2R3M0, K7CVS3
    Related
    ENSPTRP00000045723.4
    Conserved Domains (2) summary
    PLN02328
    Location:183 → 825
    PLN02328; lysine-specific histone demethylase 1 homolog
    PHA03378
    Location:23 → 98
    PHA03378; EBNA-3B; Provisional

  5. XM_016956134.4 → XP_016811623.1  lysine-specific histone demethylase 1A isoform X1

    UniProtKB/TrEMBL
    A0A2I3RC03, A0A2J8K428, A0A6D2XJD3, H2RCK3, K6ZM37
    Related
    ENSPTRP00000057448.2
    Conserved Domains (2) summary
    PLN02328
    Location:203 → 845
    PLN02328; lysine-specific histone demethylase 1 homolog
    PHA03378
    Location:23 → 98
    PHA03378; EBNA-3B; Provisional

  6. XM_063784868.1 → XP_063640938.1  lysine-specific histone demethylase 1A isoform X4

  7. XM_016956144.4 → XP_016811633.1  lysine-specific histone demethylase 1A isoform X3

    UniProtKB/TrEMBL
    A0A2I3RC03, A0A2J8K428, A0A6D2XJD3
    Conserved Domains (2) summary
    cl27535
    Location:203 → 767
    Amino_oxidase; Flavin containing amine oxidoreductase
    cl27975
    Location:23 → 98
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
Nucleotide Protein
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