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SNRPD2 small nuclear ribonucleoprotein D2 polypeptide [ Pan troglodytes (chimpanzee) ]

Gene ID: 456134, updated on 3-Apr-2024

Summary

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Official Symbol
SNRPD2provided by VGNC
Official Full Name
small nuclear ribonucleoprotein D2 polypeptideprovided by VGNC
Primary source
VGNC:VGNC:2423
Locus tag
CK820_G0049456
See related
Ensembl:ENSPTRG00000011162
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (48645394..48650240, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (48645417..48650263, complement)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene EMAP like 2 Neighboring gene microRNA mir-330 Neighboring gene gastric inhibitory polypeptide receptor Neighboring gene microRNA mir-642 Neighboring gene glutaminyl-peptide cyclotransferase like Neighboring gene F-box protein 46

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein Sm D2
Names
small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
small nuclear ribonucleoprotein polypeptide D2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48645394..48650240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054673980.1 → XP_054529955.1  small nuclear ribonucleoprotein Sm D2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8PYT4, A0A6D2X2D7, H2QGL7

  2. XM_009435838.2 → XP_009434113.1  small nuclear ribonucleoprotein Sm D2 isoform X1

    See identical proteins and their annotated locations for XP_009434113.1

    UniProtKB/TrEMBL
    A0A2J8PYT4, A0A6D2X2D7, H2QGL7
    Related
    ENSPTRP00000068533.1
    Conserved Domains (1) summary
    cd01720
    Location:24 → 113
    Sm_D2; Sm protein D2

  3. XM_063801931.1 → XP_063658001.1  small nuclear ribonucleoprotein Sm D2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8PYU3
Nucleotide Protein
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