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RFXANK regulatory factor X associated ankyrin containing protein [ Pan troglodytes (chimpanzee) ]

Gene ID: 455872, updated on 29-Mar-2024

Summary

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Official Symbol
RFXANKprovided by VGNC
Official Full Name
regulatory factor X associated ankyrin containing proteinprovided by VGNC
Primary source
VGNC:VGNC:7572
Locus tag
CK820_G0026042
See related
Ensembl:ENSPTRG00000010732
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (21847252..21856654)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (21847081..21856689)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene myocyte enhancer factor 2B Neighboring gene BLOC-1 related complex subunit 8 Neighboring gene nuclear receptor 2C2 associated protein Neighboring gene neurocan Neighboring gene U6 spliceosomal RNA Neighboring gene hyaluronan and proteoglycan link protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFXANK

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    21847252..21856654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001139746.7 → XP_001139746.2  DNA-binding protein RFXANK isoform X1

    See identical proteins and their annotated locations for XP_001139746.2

    UniProtKB/TrEMBL
    A0A2J8LST7, A0A6D2Y084, H2QFU8
    Related
    ENSPTRP00000018310.1
    Conserved Domains (3) summary
    COG0666
    Location:73 → 258
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:123 → 154
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:128 → 218
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_009435077.5 → XP_009433352.1  DNA-binding protein RFXANK isoform X3

    See identical proteins and their annotated locations for XP_009433352.1

    UniProtKB/TrEMBL
    A0A2I3T4W9, A0A2J8LSS0, A0A6D2X2L0
    Related
    ENSPTRP00000084277.1
    Conserved Domains (2) summary
    sd00045
    Location:101 → 132
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:106 → 196
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_009435075.5 → XP_009433350.1  DNA-binding protein RFXANK isoform X2

    See identical proteins and their annotated locations for XP_009433350.1

    UniProtKB/TrEMBL
    K7ASU1
    Conserved Domains (4) summary
    cd00204
    Location:117 → 237
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:127 → 216
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:93 → 143
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:122 → 153
    ANK; ANK repeat [structural motif]

  4. XM_001139504.7 → XP_001139504.1  DNA-binding protein RFXANK isoform X4

    See identical proteins and their annotated locations for XP_001139504.1

    UniProtKB/TrEMBL
    A0A2J8LST4, A0A803KJQ4, K7BUJ8
    Conserved Domains (2) summary
    cd00204
    Location:95 → 215
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:100 → 131
    ANK; ANK repeat [structural motif]

  5. XM_054672828.2 → XP_054528803.1  DNA-binding protein RFXANK isoform X1

    UniProtKB/TrEMBL
    A0A2J8LST7, A0A6D2Y084, H2QFU8
Nucleotide Protein
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