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SOCS6 suppressor of cytokine signaling 6 [ Pan troglodytes (chimpanzee) ]

Gene ID: 455521, updated on 3-Apr-2024

Summary

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Official Symbol
SOCS6provided by VGNC
Official Full Name
suppressor of cytokine signaling 6provided by VGNC
Primary source
VGNC:VGNC:13290
Locus tag
CK820_G0011221
See related
Ensembl:ENSPTRG00000010105
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (80334707..80378045)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (79267921..79333986)

Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808626 Neighboring gene rotatin Neighboring gene uncharacterized LOC100612777 Neighboring gene uncharacterized LOC100612838

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    80334707..80378045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001151286.7 → XP_001151286.2  suppressor of cytokine signaling 6

    UniProtKB/TrEMBL
    A0A2J8NCY7, A0A6D2W106, H2QEP3, K7BZ80, K7C544
    Conserved Domains (2) summary
    cd10387
    Location:373 → 472
    SH2_SOCS6; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cd03740
    Location:495 → 535
    SOCS_SOCS6; SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the ...

  2. XM_016933877.4 → XP_016789366.1  suppressor of cytokine signaling 6

    UniProtKB/TrEMBL
    A0A2J8NCY7, A0A6D2W106, H2QEP3, K7BZ80, K7C544
    Conserved Domains (2) summary
    cd10387
    Location:373 → 472
    SH2_SOCS6; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cd03740
    Location:495 → 535
    SOCS_SOCS6; SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the ...

  3. XM_063795855.1 → XP_063651925.1  suppressor of cytokine signaling 6

    UniProtKB/TrEMBL
    A0A2J8NCY7, A0A6D2W106, H2QEP3, K7BZ80

  4. XM_054672157.2 → XP_054528132.1  suppressor of cytokine signaling 6

    UniProtKB/TrEMBL
    A0A2J8NCY7, A0A6D2W106, H2QEP3, K7BZ80
Nucleotide Protein
Heading Accession and Version

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