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TCF4 transcription factor 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 455432, updated on 3-Apr-2024

Summary

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Official Symbol
TCF4provided by VGNC
Official Full Name
transcription factor 4provided by VGNC
Primary source
VGNC:VGNC:13292
Locus tag
CK820_G0011423
See related
Ensembl:ENSPTRG00000010040
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (65281564..65694240, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (64217930..64630575, complement)

Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808612 Neighboring gene coiled-coil domain containing 68 Neighboring gene uncharacterized LOC104003162 Neighboring gene uncharacterized LOC134808613 Neighboring gene uncharacterized LOC129137824

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    65281564..65694240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016933751.4 → XP_016789240.2  transcription factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A2J8NDR8, A0A6D2WLJ9, H2R0J5

  2. XM_016933758.4 → XP_016789247.1  transcription factor 4 isoform X12

    UniProtKB/TrEMBL
    A0A2J8NDQ8, A0A2J8NDR1
    Conserved Domains (1) summary
    smart00353
    Location:574 → 627
    HLH; helix loop helix domain

  3. XM_063795736.1 → XP_063651806.1  transcription factor 4 isoform X16

    UniProtKB/TrEMBL
    A0A2J8NDT1

  4. XM_016933764.4 → XP_016789253.1  transcription factor 4 isoform X19

    UniProtKB/TrEMBL
    A0A2I3TC50, A0A2J8NDS8, A0A2J8NDT8, A0A6D2WFH7
    Conserved Domains (1) summary
    smart00353
    Location:550 → 603
    HLH; helix loop helix domain

  5. XM_054672282.2 → XP_054528257.1  transcription factor 4 isoform X22

    UniProtKB/TrEMBL
    A0A2J8NDU2

  6. XM_054672283.2 → XP_054528258.1  transcription factor 4 isoform X23

    UniProtKB/TrEMBL
    A0A2J8NDQ4

  7. XM_054672279.2 → XP_054528254.1  transcription factor 4 isoform X20

  8. XM_054672280.2 → XP_054528255.1  transcription factor 4 isoform X21

  9. XM_063795737.1 → XP_063651807.1  transcription factor 4 isoform X16

    UniProtKB/TrEMBL
    A0A2J8NDT1

  10. XM_063795732.1 → XP_063651802.1  transcription factor 4 isoform X13

  11. XM_016933759.4 → XP_016789248.1  transcription factor 4 isoform X12

    UniProtKB/TrEMBL
    A0A2J8NDQ8, A0A2J8NDR1
    Related
    ENSPTRP00000082603.1
    Conserved Domains (1) summary
    smart00353
    Location:574 → 627
    HLH; helix loop helix domain

  12. XM_054672278.2 → XP_054528253.1  transcription factor 4 isoform X10

  13. XM_054672275.2 → XP_054528250.1  transcription factor 4 isoform X7

  14. XM_054672276.2 → XP_054528251.1  transcription factor 4 isoform X8

  15. XM_054672277.2 → XP_054528252.1  transcription factor 4 isoform X9

  16. XM_016933756.4 → XP_016789245.2  transcription factor 4 isoform X6

  17. XM_063795738.1 → XP_063651808.1  transcription factor 4 isoform X17

  18. XM_063795730.1 → XP_063651800.1  transcription factor 4 isoform X13

  19. XM_063795739.1 → XP_063651809.1  transcription factor 4 isoform X18

  20. XM_063795733.1 → XP_063651803.1  transcription factor 4 isoform X14

    UniProtKB/TrEMBL
    A0A2J8NDT9

  21. XM_063795735.1 → XP_063651805.1  transcription factor 4 isoform X16

    UniProtKB/TrEMBL
    A0A2J8NDT1

  22. XM_016933757.4 → XP_016789246.1  transcription factor 4 isoform X12

    UniProtKB/TrEMBL
    A0A2J8NDQ8, A0A2J8NDR1
    Conserved Domains (1) summary
    smart00353
    Location:574 → 627
    HLH; helix loop helix domain

  23. XM_016933768.4 → XP_016789257.1  transcription factor 4 isoform X20

    UniProtKB/TrEMBL
    A0A2I3TC50, A0A2J8NDT8, A0A6D2WFH7

  24. XM_054672281.2 → XP_054528256.1  transcription factor 4 isoform X21

  25. XM_024350850.3 → XP_024206618.1  transcription factor 4 isoform X22

    UniProtKB/TrEMBL
    A0A2I3TC50, A0A2J8NDT8, A0A2J8NDU2, A0A6D2WFH7
    Conserved Domains (1) summary
    smart00353
    Location:546 → 599
    HLH; helix loop helix domain

  26. XM_016933765.4 → XP_016789254.1  transcription factor 4 isoform X19

    UniProtKB/TrEMBL
    A0A2I3TC50, A0A2J8NDS8, A0A2J8NDT8, A0A6D2WFH7
    Conserved Domains (1) summary
    smart00353
    Location:550 → 603
    HLH; helix loop helix domain

  27. XM_016933772.4 → XP_016789261.1  transcription factor 4 isoform X25

    UniProtKB/TrEMBL
    A0A2I3SFT1, A0A2I3TC50, A0A2J8NDT3, A0A2J8NDT8, A0A6D2WFH7, A0A6D2WZ83
    Related
    ENSPTRP00000075349.1
    Conserved Domains (1) summary
    smart00353
    Location:528 → 581
    HLH; helix loop helix domain

  28. XM_016933771.4 → XP_016789260.1  transcription factor 4 isoform X24

    UniProtKB/TrEMBL
    A0A2I3TC50, A0A2J8NDT8, A0A6D2WFH7

  29. XM_063795742.1 → XP_063651812.1  transcription factor 4 isoform X31

    UniProtKB/TrEMBL
    A0A2J8NDW8

  30. XM_024350855.3 → XP_024206623.1  transcription factor 4 isoform X30

    UniProtKB/TrEMBL
    A0A2I3SSH8, A0A2J8NDW9
    Conserved Domains (1) summary
    cd18945
    Location:432 → 516
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  31. XM_016933774.4 → XP_016789263.1  transcription factor 4 isoform X29

    UniProtKB/TrEMBL
    A0A2I3SSH8, A0A2J8NDW2
    Conserved Domains (1) summary
    cd18945
    Location:487 → 571
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  32. XM_016933773.4 → XP_016789262.1  transcription factor 4 isoform X28

    UniProtKB/TrEMBL
    A0A2I3S161, A0A2I3SSH8, A0A2J8NDX6, A0A6D2VWJ9
    Related
    ENSPTRP00000070585.1
    Conserved Domains (1) summary
    cd18945
    Location:491 → 575
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  33. XM_024350857.3 → XP_024206625.1  transcription factor 4 isoform X30

    UniProtKB/TrEMBL
    A0A2I3SSH8, A0A2J8NDW9
    Conserved Domains (1) summary
    cd18945
    Location:432 → 516
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  34. XM_024350864.3 → XP_024206632.1  transcription factor 4 isoform X35

    UniProtKB/TrEMBL
    A0A2J8NDV8
    Conserved Domains (1) summary
    smart00353
    Location:409 → 462
    HLH; helix loop helix domain

  35. XM_016933780.4 → XP_016789269.1  transcription factor 4 isoform X34

    UniProtKB/TrEMBL
    A0A2J8NDV8, A0A2J8NDX0
    Conserved Domains (1) summary
    cd18945
    Location:398 → 482
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  36. XM_016933778.4 → XP_016789267.1  transcription factor 4 isoform X32

    UniProtKB/TrEMBL
    A0A2I3S5L1, A0A2J8NDV6, A0A2J8NDV8, A0A6D2YCG5
    Related
    ENSPTRP00000071849.1
    Conserved Domains (1) summary
    cd18945
    Location:402 → 486
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  37. XM_016933754.4 → XP_016789243.1  transcription factor 4 isoform X11

    UniProtKB/TrEMBL
    A0A2I3T178

  38. XM_054672274.2 → XP_054528249.1  transcription factor 4 isoform X5

  39. XM_016933753.4 → XP_016789242.2  transcription factor 4 isoform X3

  40. XM_016933755.4 → XP_016789244.2  transcription factor 4 isoform X4

  41. XM_016933752.4 → XP_016789241.2  transcription factor 4 isoform X2

  42. XM_063795731.1 → XP_063651801.1  transcription factor 4 isoform X13

  43. XM_063795734.1 → XP_063651804.1  transcription factor 4 isoform X15

  44. XM_063795740.1 → XP_063651810.1  transcription factor 4 isoform X26

  45. XM_063795741.1 → XP_063651811.1  transcription factor 4 isoform X30

    UniProtKB/TrEMBL
    A0A2J8NDW9

  46. XM_054672285.2 → XP_054528260.1  transcription factor 4 isoform X31

    UniProtKB/TrEMBL
    A0A2J8NDW8

  47. XM_024350854.3 → XP_024206622.1  transcription factor 4 isoform X30

    UniProtKB/TrEMBL
    A0A2I3SSH8, A0A2J8NDW9
    Conserved Domains (1) summary
    cd18945
    Location:432 → 516
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  48. XM_024350852.3 → XP_024206620.1  transcription factor 4 isoform X27

    UniProtKB/TrEMBL
    A0A2I3SSH8
    Conserved Domains (1) summary
    cd18945
    Location:492 → 576
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  49. XM_054672284.2 → XP_054528259.1  transcription factor 4 isoform X31

    UniProtKB/TrEMBL
    A0A2J8NDW8

  50. XM_016933779.4 → XP_016789268.1  transcription factor 4 isoform X33

    UniProtKB/TrEMBL
    A0A2J8NDV8
    Conserved Domains (1) summary
    smart00353
    Location:413 → 466
    HLH; helix loop helix domain
Nucleotide Protein
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