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TGIF1 TGFB induced factor homeobox 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 455312, updated on 3-Apr-2024

Summary

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Official Symbol
TGIF1provided by VGNC
Official Full Name
TGFB induced factor homeobox 1provided by VGNC
Primary source
VGNC:VGNC:7335
Locus tag
CK820_G0018478
See related
Ensembl:ENSPTRG00000009838
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
TGIF
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (27430044..27440784, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (26352667..26363469, complement)

Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene DLG associated protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC107969448 Neighboring gene uncharacterized LOC741407 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC112206240

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Accelerated evolution of nervous system genes in the origin of Homo sapiens. Dorus S, et al. Cell, 2004 Dec 29. PMID 15620360

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein TGIF1
Names
5'-TG-3'-interacting factor 1
TG-interacting factor
TGFB-induced factor (TALE family homeobox)
transforming growth factor-beta-induced factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009815.1 → NP_001009815.1  homeobox protein TGIF1

    See identical proteins and their annotated locations for NP_001009815.1

    Status: PROVISIONAL

    Source sequence(s)
    AY665270
    UniProtKB/Swiss-Prot
    Q5IS58
    UniProtKB/TrEMBL
    A0A2J8MP40, A0A663D7V1, K7B0E0, K7D3K7
    Related
    ENSPTRP00000016743.3, ENSPTRT00000018072.4
    Conserved Domains (1) summary
    pfam05920
    Location:182 → 221
    Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    27430044..27440784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009433726.4 → XP_009432001.1  homeobox protein TGIF1 isoform X3

    See identical proteins and their annotated locations for XP_009432001.1

    UniProtKB/TrEMBL
    A0A2J8MP50, A0A6D2XHF9, K7BHQ2
    Related
    ENSPTRP00000073447.1
    Conserved Domains (1) summary
    pfam05920
    Location:67 → 106
    Homeobox_KN; Homeobox KN domain

  2. XM_009433732.5 → XP_009432007.1  homeobox protein TGIF1 isoform X2

    See identical proteins and their annotated locations for XP_009432007.1

    UniProtKB/TrEMBL
    A0A2J8MP46, A0A2J8MP47
    Conserved Domains (1) summary
    pfam05920
    Location:33 → 72
    Homeobox_KN; Homeobox KN domain

  3. XM_009433728.5 → XP_009432003.1  homeobox protein TGIF1 isoform X1

    See identical proteins and their annotated locations for XP_009432003.1

    UniProtKB/TrEMBL
    A0A2J8MP32, A0A2J8MP47, A0A6D2WUA4, K7C433
    Related
    ENSPTRP00000063638.1
    Conserved Domains (1) summary
    pfam05920
    Location:53 → 92
    Homeobox_KN; Homeobox KN domain

  4. XM_054671654.2 → XP_054527629.1  homeobox protein TGIF1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MP46

  5. XM_009433729.5 → XP_009432004.1  homeobox protein TGIF1 isoform X2

    See identical proteins and their annotated locations for XP_009432004.1

    UniProtKB/TrEMBL
    A0A2J8MP46, A0A2J8MP47
    Conserved Domains (1) summary
    pfam05920
    Location:33 → 72
    Homeobox_KN; Homeobox KN domain

  6. XM_009433730.5 → XP_009432005.1  homeobox protein TGIF1 isoform X2

    See identical proteins and their annotated locations for XP_009432005.1

    UniProtKB/TrEMBL
    A0A2J8MP46, A0A2J8MP47
    Conserved Domains (1) summary
    pfam05920
    Location:33 → 72
    Homeobox_KN; Homeobox KN domain

  7. XM_054671653.2 → XP_054527628.1  homeobox protein TGIF1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MP46

  8. XM_009433731.5 → XP_009432006.1  homeobox protein TGIF1 isoform X2

    See identical proteins and their annotated locations for XP_009432006.1

    UniProtKB/TrEMBL
    A0A2J8MP46, A0A2J8MP47
    Conserved Domains (1) summary
    pfam05920
    Location:33 → 72
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5IS58.1 GenPept UniProtKB/Swiss-Prot:Q5IS58

Gene LinkOut

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