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CLTC clathrin heavy chain [ Pan troglodytes (chimpanzee) ]

Gene ID: 455168, updated on 17-Aug-2024

Summary

Official Symbol
CLTCprovided by VGNC
Official Full Name
clathrin heavy chainprovided by VGNC
Primary source
VGNC:VGNC:9237
Locus tag
CK820_G0020843
See related
Ensembl:ENSPTRG00000009472
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See CLTC in Genome Data Viewer
Location:
chromosome: 19
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (72738504..72813963)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (70920876..70998758)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene DEAH-box helicase 40 Neighboring gene peptidyl-tRNA hydrolase 2 Neighboring gene vacuole membrane protein 1 Neighboring gene microRNA mir-21

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of clathrin coat of coated pit PubMed 
part_of clathrin coat of trans-Golgi network vesicle PubMed 
part_of clathrin complex PubMed 
located_in clathrin-coated endocytic vesicle PubMed 
located_in extracellular exosome PubMed 
located_in spindle PubMed 

General protein information

Preferred Names
clathrin heavy chain 1
Names
clathrin, heavy chain (Hc)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    72738504..72813963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001136053.7XP_001136053.1  clathrin heavy chain 1 isoform X2

    See identical proteins and their annotated locations for XP_001136053.1

    UniProtKB/TrEMBL
    A0A2J8MEY0, A0A2J8MEY4, A0A6D2X581, H2QZP7
    Related
    ENSPTRP00000039324.3
    Conserved Domains (6) summary
    smart00299
    Location:12741416
    CLH; Clathrin heavy chain repeat homology
    sd00006
    Location:11051131
    TPR; TPR repeat [structural motif]
    pfam00637
    Location:9791119
    Clathrin; Region in Clathrin and VPS
    pfam01394
    Location:198234
    Clathrin_propel; Clathrin propeller repeat
    pfam09268
    Location:331354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356421
    Clathrin_H_link; Clathrin-H-link
  2. XM_009432958.4XP_009431233.1  clathrin heavy chain 1 isoform X1

    See identical proteins and their annotated locations for XP_009431233.1

    UniProtKB/TrEMBL
    A0A2J8MEY4, K7CCE3
    Related
    ENSPTRP00000093953.1
    Conserved Domains (6) summary
    smart00299
    Location:12741416
    CLH; Clathrin heavy chain repeat homology
    sd00006
    Location:11051131
    TPR; TPR repeat [structural motif]
    pfam00637
    Location:9791119
    Clathrin; Region in Clathrin and VPS
    pfam01394
    Location:198234
    Clathrin_propel; Clathrin propeller repeat
    pfam09268
    Location:331354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356421
    Clathrin_H_link; Clathrin-H-link
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