COL1A2 collagen type I alpha 2 chain [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: COL1A2provided by VGNC
Official Full Name: collagen type I alpha 2 chainprovided by VGNC
Primary source: VGNC:VGNC:10658
Locus tag: CK820_G0033064
See related: Ensembl:ENSPTRG00000019409
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 52

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (103772354..103808125)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (100119244..100155041)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

COL1A1 (e-PCR)
- UniSTS:262913

MARC_5785-5786:991939715:3 (e-PCR)
- UniSTS:231169

MARC_5785-5786:997299286:1 (e-PCR)
- UniSTS:231169

GDB:180975 (e-PCR)
- UniSTS:155152

Col1a1 (e-PCR), detects polymorphism
- UniSTS:141374

PMC34669P1 (e-PCR)
- UniSTS:273227

GDB:177792 (e-PCR)
- UniSTS:154961

COL1A1_1682 (e-PCR)
- UniSTS:277113

MARC_5219-5220:996690145:1 (e-PCR)
- UniSTS:269465

fj67h06.x1 (e-PCR)
- UniSTS:199838

WI-18942 (e-PCR)
- UniSTS:30883

RH77855 (e-PCR)
- UniSTS:68277

GDB:180347 (e-PCR)
- UniSTS:155079

SGC32927 (e-PCR)
- UniSTS:73934

RH45119 (e-PCR)
- UniSTS:58326

GDB:177260 (e-PCR)
- UniSTS:154850

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent conferring tensile strength	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in extracellular matrix organization	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in collagen-containing extracellular matrix	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-2(I) chain

Names: alpha 1 type I collagen; collagen, type I, alpha 1; collagen, type I, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

103772354..103808125

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001168894.7 → XP_001168894.1 collagen alpha-2(I) chain

UniProtKB/TrEMBL

A0A2J8L483, A0A6D2XDH1, H2QUY2

Related

ENSPTRP00000033204.3

Conserved Domains (3) summary

pfam01391
Location:115 → 174

Collagen; Collagen triple helix repeat (20 copies)

pfam01410
Location:1134 → 1365

COLFI; Fibrillar collagen C-terminal domain

cl26386
Location:954 → 1083

DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III