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HDAC5 histone deacetylase 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454721, updated on 3-Apr-2024

Summary

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Official Symbol
HDAC5provided by VGNC
Official Full Name
histone deacetylase 5provided by VGNC
Primary source
VGNC:VGNC:9316
Locus tag
CK820_G0050730
See related
Ensembl:ENSPTRG00000009263
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (23774430..23819611)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (22014093..22060648)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene homologous recombination factor with OB-fold Neighboring gene U6 spliceosomal RNA Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene LSM12 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 5
XP_024205991.1
XP_024205992.1
XP_024205993.1
XP_024205995.1
XP_054527410.1
XP_054527411.1
XP_054527412.1
XP_054527413.1
XP_063654590.1
XP_063654591.1
XP_063654592.1
XP_063654593.1
XP_063654594.1
XP_063654595.1
XP_063654596.1
XP_063654597.1
XP_063654598.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    23774430..23819611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024350223.3 → XP_024205991.1  histone deacetylase 5 isoform X3

    UniProtKB/TrEMBL
    A0A2J8J4D0, A0A2J8J4D1
    Conserved Domains (2) summary
    cd10164
    Location:69 → 165
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:680 → 1096
    HDAC5; Histone deacetylase 5

  2. XM_024350225.3 → XP_024205993.1  histone deacetylase 5 isoform X4

    UniProtKB/TrEMBL
    A0A2J8J4D1, A0A2J8J4D7
    Conserved Domains (2) summary
    cd10164
    Location:68 → 164
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:679 → 1095
    HDAC5; Histone deacetylase 5

  3. XM_063798528.1 → XP_063654598.1  histone deacetylase 5 isoform X7

  4. XM_054671437.2 → XP_054527412.1  histone deacetylase 5 isoform X7

  5. XM_063798523.1 → XP_063654593.1  histone deacetylase 5 isoform X5

  6. XM_054671436.2 → XP_054527411.1  histone deacetylase 5 isoform X6

  7. XM_024350227.3 → XP_024205995.1  histone deacetylase 5 isoform X4

    UniProtKB/TrEMBL
    A0A2J8J4D1, A0A2J8J4D7
    Conserved Domains (2) summary
    cd10164
    Location:68 → 164
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:679 → 1095
    HDAC5; Histone deacetylase 5

  8. XM_063798525.1 → XP_063654595.1  histone deacetylase 5 isoform X9

  9. XM_063798526.1 → XP_063654596.1  histone deacetylase 5 isoform X9

  10. XM_024350224.3 → XP_024205992.1  histone deacetylase 5 isoform X3

    UniProtKB/TrEMBL
    A0A2J8J4D0, A0A2J8J4D1
    Conserved Domains (2) summary
    cd10164
    Location:69 → 165
    ClassIIa_HDAC5_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase
    cd10007
    Location:680 → 1096
    HDAC5; Histone deacetylase 5

  11. XM_054671435.2 → XP_054527410.1  histone deacetylase 5 isoform X5

  12. XM_063798527.1 → XP_063654597.1  histone deacetylase 5 isoform X10

  13. XM_063798524.1 → XP_063654594.1  histone deacetylase 5 isoform X8

  14. XM_063798522.1 → XP_063654592.1  histone deacetylase 5 isoform X3

    UniProtKB/TrEMBL
    A0A2J8J4D0

  15. XM_063798520.1 → XP_063654590.1  histone deacetylase 5 isoform X1

  16. XM_063798521.1 → XP_063654591.1  histone deacetylase 5 isoform X2

    UniProtKB/TrEMBL
    A0A2J8J4D4

  17. XM_054671438.2 → XP_054527413.1  histone deacetylase 5 isoform X9

Nucleotide Protein
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