SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SMARCE1provided by VGNC
Official Full Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1provided by VGNC
Primary source: VGNC:VGNC:9635
Locus tag: CK820_G0039112
See related: Ensembl:ENSPTRG00000022902
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	19	NC_072417.2 (27452521..27472765)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	17	NC_072415.1 (25636108..25657224)

Chromosome 19 - NC_072417.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D11S2921 (e-PCR)
- UniSTS:152074

GDB:312714 (e-PCR)
- UniSTS:156429

GDB:434012 (e-PCR)
- UniSTS:157204

D8S2278 (e-PCR)
- UniSTS:473906

D8S2279 (e-PCR)
- UniSTS:473907

STS-AA035420 (e-PCR)
- UniSTS:22083

A002R45 (e-PCR)
- UniSTS:27721

D17S1237 (e-PCR)
- UniSTS:149850

D10S16 (e-PCR)
- UniSTS:155756

SMARCE1_2145 (e-PCR)
- UniSTS:281023

RH103157 (e-PCR)
- UniSTS:97491

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables nuclear receptor binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of SWI/SNF complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

27452521..27472765

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_511478.9 → XP_511478.2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

See identical proteins and their annotated locations for XP_511478.2

UniProtKB/TrEMBL

A0A2I3RU20, A0A2J8KGJ8, A0A2J8KGK5, A0A6D2W080

Related

ENSPTRP00000068187.1

Conserved Domains (3) summary

PTZ00121
Location:110 → 411

PTZ00121; MAEBL; Provisional

COG3883
Location:227 → 320

CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]

cd01390
Location:70 → 131

HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
XM_009432223.5 → XP_009430498.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X4

UniProtKB/TrEMBL

A0A2J8KGJ8

Conserved Domains (1) summary

cd01390
Location:70 → 131

HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
XM_009432222.5 → XP_009430497.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

See identical proteins and their annotated locations for XP_009430497.1

UniProtKB/TrEMBL

A0A2J8KGJ7, A0A2J8KGJ8

Conserved Domains (3) summary

COG3883
Location:209 → 302

CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]

cd01390
Location:52 → 113

HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...

cl26511
Location:92 → 393

Neuromodulin_N; Gap junction protein N-terminal region
XM_054670918.2 → XP_054526893.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

UniProtKB/TrEMBL

A0A2I3T941, A0A2J8KGJ1, A0A6D2XFX6
XM_001169953.8 → XP_001169953.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X5

See identical proteins and their annotated locations for XP_001169953.1

UniProtKB/TrEMBL

A0A2J8KGI3, A0A2J8KGL5

Conserved Domains (2) summary

cd01390
Location:2 → 61

HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

NF033838
Location:151 → 264

PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form