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RARA retinoic acid receptor alpha [ Pan troglodytes (chimpanzee) ]

Gene ID: 454647, updated on 3-Apr-2024

Summary

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Official Symbol
RARAprovided by VGNC
Official Full Name
retinoic acid receptor alphaprovided by VGNC
Primary source
VGNC:VGNC:9556
Locus tag
CK820_G0039127
See related
Ensembl:ENSPTRG00000009120
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (27748196..27796808, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (25933511..25981172, complement)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC134808948 Neighboring gene gap junction protein delta 3 Neighboring gene uncharacterized LOC134808949 Neighboring gene cell division cycle 6 Neighboring gene WAS/WASL interacting protein family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    27748196..27796808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016931848.4 → XP_016787337.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I3SS51, A0A2I3T9U9, A0A2J8KGL7, A0A6D2XJ34
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_063799610.1 → XP_063655680.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I3SS51, A0A2J8KGL7, A0A6D2XJ34

  3. XM_016931847.3 → XP_016787336.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I3SS51, A0A2I3T9U9, A0A2J8KGL7, A0A6D2XJ34
    Related
    ENSPTRP00000079369.1
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_063799611.1 → XP_063655681.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I3SS51, A0A2J8KGL7, A0A6D2XJ34

  5. XM_054670920.2 → XP_054526895.1  retinoic acid receptor alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I3SMQ3, A0A2J8KGK2, A0A6D2W242

  6. XM_016931851.4 → XP_016787340.1  retinoic acid receptor alpha isoform X2

    UniProtKB/TrEMBL
    A0A2I3T9U9, A0A2J8KGK7
    Related
    ENSPTRP00000085968.1
    Conserved Domains (2) summary
    cd06937
    Location:181 → 411
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:77 → 161
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
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