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TCF12 transcription factor 12 [ Pan troglodytes (chimpanzee) ]

Gene ID: 453466, updated on 3-Apr-2024

Summary

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Official Symbol
TCF12provided by VGNC
Official Full Name
transcription factor 12provided by VGNC
Primary source
VGNC:VGNC:13428
Locus tag
CK820_G0008481
See related
Ensembl:ENSPTRG00000007109
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (48934031..49300366)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (48909159..49275222)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene acyl-CoA-binding domain-containing protein 7-like Neighboring gene uncharacterized LOC134808534 Neighboring gene uncharacterized LOC134808537 Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC134808535 Neighboring gene uncharacterized LOC746315

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 12
Names
transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48934031..49300366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016927652.4 → XP_016783141.1  transcription factor 12 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NSD0, A0A2J8NSD6, A0A6D2VZU1, K6ZB50
    Related
    ENSPTRP00000063123.1
    Conserved Domains (1) summary
    smart00353
    Location:583 → 636
    HLH; helix loop helix domain

  2. XM_063795006.1 → XP_063651076.1  transcription factor 12 isoform X11

  3. XM_063795008.1 → XP_063651078.1  transcription factor 12 isoform X12

  4. XM_063795002.1 → XP_063651072.1  transcription factor 12 isoform X9

  5. XM_016927647.4 → XP_016783136.1  transcription factor 12 isoform X3

    UniProtKB/TrEMBL
    A0A2J8NSD6, A0A2J8NSE3, A0A6D2WUD7, H2Q9H9
    Conserved Domains (1) summary
    smart00353
    Location:607 → 660
    HLH; helix loop helix domain

  6. XM_016927645.4 → XP_016783134.1  transcription factor 12 isoform X1

    UniProtKB/TrEMBL
    A0A2J8NSD6
    Conserved Domains (2) summary
    smart00353
    Location:619 → 672
    HLH; helix loop helix domain
    pfam09786
    Location:287 → 460
    CytochromB561_N; Cytochrome B561, N terminal

  7. XM_016927646.4 → XP_016783135.1  transcription factor 12 isoform X2

    UniProtKB/TrEMBL
    A0A2J8NSD6
    Conserved Domains (2) summary
    smart00353
    Location:618 → 671
    HLH; helix loop helix domain
    pfam09786
    Location:287 → 460
    CytochromB561_N; Cytochrome B561, N terminal

  8. XM_016927650.4 → XP_016783139.1  transcription factor 12 isoform X6

    UniProtKB/TrEMBL
    A0A2J8NSD6
    Conserved Domains (1) summary
    smart00353
    Location:595 → 648
    HLH; helix loop helix domain

  9. XM_016927651.4 → XP_016783140.1  transcription factor 12 isoform X7

    UniProtKB/TrEMBL
    A0A2J8NSD6
    Conserved Domains (1) summary
    smart00353
    Location:594 → 647
    HLH; helix loop helix domain

  10. XM_016927649.4 → XP_016783138.1  transcription factor 12 isoform X4

    UniProtKB/TrEMBL
    A0A2J8NSD6

  11. XM_063794999.1 → XP_063651069.1  transcription factor 12 isoform X5

  12. XM_016927655.4 → XP_016783144.1  transcription factor 12 isoform X13

    UniProtKB/TrEMBL
    A0A2J8NSD6

  13. XM_063795004.1 → XP_063651074.1  transcription factor 12 isoform X10

  14. XM_063795011.1 → XP_063651081.1  transcription factor 12 isoform X15

  15. XM_063795012.1 → XP_063651082.1  transcription factor 12 isoform X16

  16. XM_063795013.1 → XP_063651083.1  transcription factor 12 isoform X20

  17. XM_063795014.1 → XP_063651084.1  transcription factor 12 isoform X21

  18. XM_063795009.1 → XP_063651079.1  transcription factor 12 isoform X14

  19. XM_063795001.1 → XP_063651071.1  transcription factor 12 isoform X8

    UniProtKB/TrEMBL
    A0A2J8NSD0, A0A6D2VZU1, K6ZB50

  20. XM_054667581.2 → XP_054523556.1  transcription factor 12 isoform X3

    UniProtKB/TrEMBL
    A0A2J8NSE3, A0A6D2WUD7, H2Q9H9

  21. XM_054667580.2 → XP_054523555.1  transcription factor 12 isoform X1

  22. XM_063795003.1 → XP_063651073.1  transcription factor 12 isoform X9

  23. XM_063795007.1 → XP_063651077.1  transcription factor 12 isoform X11

  24. XM_063795005.1 → XP_063651075.1  transcription factor 12 isoform X10

  25. XM_016927657.4 → XP_016783146.1  transcription factor 12 isoform X17

    UniProtKB/TrEMBL
    A0A2I3RCW9, A0A2J8NSH1, A0A6D2VU50
    Related
    ENSPTRP00000062492.1
    Conserved Domains (1) summary
    smart00353
    Location:437 → 490
    HLH; helix loop helix domain

  26. XM_003314688.6 → XP_003314736.1  transcription factor 12 isoform X18

    See identical proteins and their annotated locations for XP_003314736.1

    UniProtKB/TrEMBL
    A0A2J8NSC6, A0A803KIZ6, K7APR4
    Conserved Domains (1) summary
    smart00353
    Location:413 → 466
    HLH; helix loop helix domain

  27. XM_009429213.5 → XP_009427488.1  transcription factor 12 isoform X19

    Conserved Domains (1) summary
    smart00353
    Location:412 → 465
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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