YY1 YY1 transcription factor [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: YY1provided by VGNC
Official Full Name: YY1 transcription factorprovided by VGNC
Primary source: VGNC:VGNC:12433
Locus tag: CK820_G0024972
See related: Ensembl:ENSPTRG00000006717
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	15	NC_072413.2 (98239864..98283905)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	14	NC_072412.1 (91544383..91583972)

Chromosome 15 - NC_072413.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

RH68412 (e-PCR)
- UniSTS:51218

RH44921 (e-PCR)
- UniSTS:36888

SHGC-87 (e-PCR)
- UniSTS:167707

D14S1300 (e-PCR)
- UniSTS:45123

G36321 (e-PCR)
- UniSTS:20561

YY1__3892 (e-PCR)
- UniSTS:462950

G06170 (e-PCR)
- UniSTS:49520

G35620 (e-PCR)
- UniSTS:52091

RH1618 (e-PCR)
- UniSTS:42115

HUM000HE11 (e-PCR)
- UniSTS:39583

G36215 (e-PCR)
- UniSTS:55727

D14S1203 (e-PCR)
- UniSTS:49601

A006N16 (e-PCR)
- UniSTS:61904

WI-19259 (e-PCR)
- UniSTS:34789

G35591 (e-PCR)
- UniSTS:45285

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of PcG protein complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of chromatin	IEA Inferred from Electronic Annotation more info	PubMed
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcriptional repressor protein YY1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

98239864..98283905

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009428472.5 → XP_009426747.2 transcriptional repressor protein YY1

UniProtKB/TrEMBL

A0A2J8QM23, A0A6D2W5T0, H2Q8X3, K7DAI9

Related

ENSPTRP00000011451.5

Conserved Domains (2) summary

COG5048
Location:268 → 407

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:327 → 347

ZF_C2H2; C2H2 Zn finger [structural motif]