MNAT1 MNAT1 component of CDK activating kinase [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: MNAT1provided by VGNC
Official Full Name: MNAT1 component of CDK activating kinaseprovided by VGNC
Primary source: VGNC:VGNC:8356
Locus tag: CK820_G0002598
See related: Ensembl:ENSPTRG00000006412
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	15	NC_072413.2 (58736159..58968975)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	14	NC_072412.1 (52002925..52233645)

Chromosome 15 - NC_072413.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Markers

RH45647 (e-PCR)
- UniSTS:73016

RH70941 (e-PCR)
- UniSTS:50240

RH70690 (e-PCR)
- UniSTS:50241

RH65471 (e-PCR)
- UniSTS:38983

G67480 (e-PCR)
- UniSTS:186721

G67481 (e-PCR)
- UniSTS:186722

G67482 (e-PCR)
- UniSTS:186723

D14S1166 (e-PCR)
- UniSTS:52333

GDB:451562 (e-PCR)
- UniSTS:157311

D14S592 (e-PCR), detects polymorphism
- UniSTS:78229

RH47826 (e-PCR)
- UniSTS:66208

MNAT1__6327 (e-PCR)
- UniSTS:464057

RH80245 (e-PCR)
- UniSTS:89789

RH69606 (e-PCR)
- UniSTS:30690

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in nucleotide-excision repair	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of transcription factor TFIIH holo complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: CDK-activating kinase assembly factor MAT1

Names: MNAT CDK-activating kinase assembly factor 1; MNAT1, CDK activating kinase assembly factor; menage a trois 1 (CAK assembly factor); menage a trois homolog 1, cyclin H assembly factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

58736159..58968975

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001167724.7 → XP_001167724.1 CDK-activating kinase assembly factor MAT1 isoform X1

See identical proteins and their annotated locations for XP_001167724.1

UniProtKB/TrEMBL

A0A2I3TVA9, A0A2J8PI39, A0A6D2XQY5

Related

ENSPTRP00000092922.1

Conserved Domains (1) summary

TIGR00570
Location:1 → 309

cdk7; CDK-activating kinase assembly factor MAT1
XM_016926179.4 → XP_016781668.1 CDK-activating kinase assembly factor MAT1 isoform X2

Conserved Domains (2) summary

pfam06391
Location:53 → 250

MAT1; CDK-activating kinase assembly factor MAT1

cl17238
Location:3 → 50

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...