KLF5 KLF transcription factor 5 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: KLF5provided by VGNC
Official Full Name: KLF transcription factor 5provided by VGNC
Primary source: VGNC:VGNC:58889
Locus tag: CK820_G0004584
See related: Ensembl:ENSPTRG00000039565
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	14	NC_072412.2 (78738648..78761346)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	13	NC_072411.1 (74043360..74061978)

Chromosome 14 - NC_072412.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

116d19FWD (e-PCR)
- UniSTS:240645

257f24FWD (e-PCR)
- UniSTS:240678

42o17FWD (e-PCR)
- UniSTS:240706

G67088 (e-PCR)
- UniSTS:178321

KLF5_2413 (e-PCR)
- UniSTS:280810

KLF5 (e-PCR)
- UniSTS:505340

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cilium assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in centriolar satellite	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: Krueppel-like factor 5

Names: Kruppel like factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

78738648..78761346

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063792197.1 → XP_063648267.1 Krueppel-like factor 5 isoform X2

UniProtKB/TrEMBL

A0A2J8PBJ6
XM_001136935.6 → XP_001136935.1 Krueppel-like factor 5 isoform X1

See identical proteins and their annotated locations for XP_001136935.1

UniProtKB/TrEMBL

A0A2I3SGH0, A0A2J8PBI5, A0A6D2YAJ6, H2RIF6, K7BXG6

Related

ENSPTRP00000061314.2

Conserved Domains (5) summary

COG5048
Location:359 → 433

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:378 → 397

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:433 → 455

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:419 → 444

zf-H2C2_2; Zinc-finger double domain

cd21579
Location:3 → 370

KLF5_N; N-terminal domain of Kruppel-like factor 5
XM_054665367.2 → XP_054521342.1 Krueppel-like factor 5 isoform X3