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RNF6 ring finger protein 6 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452499, updated on 3-Apr-2024

Summary

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Official Symbol
RNF6provided by VGNC
Official Full Name
ring finger protein 6provided by VGNC
Primary source
VGNC:VGNC:9817
Locus tag
CK820_G0032773
See related
Ensembl:ENSPTRG00000005723
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (25262346..25390058, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (20035268..20163567, complement)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8A2 Neighboring gene U6 spliceosomal RNA Neighboring gene shisa family member 2 Neighboring gene exopolyphosphatase PRUNE1-like Neighboring gene 52 kDa repressor of the inhibitor of the protein kinase-like Neighboring gene cyclin dependent kinase 8 Neighboring gene uncharacterized LOC107967860

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF6
Names
ring finger protein (C3H2C3 type) 6
XP_001156405.3
XP_016780573.3
XP_016780574.3
XP_016780575.1
XP_016780576.1
XP_054521099.2
XP_054521100.2
XP_054521101.2
XP_054521102.2
XP_054521103.1
XP_054521105.1
XP_054521107.1
XP_054521108.1
XP_054521109.1
XP_054521110.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    25262346..25390058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016925087.3 → XP_016780576.1  E3 ubiquitin-protein ligase RNF6 isoform X3

  2. XM_016925084.4 → XP_016780573.3  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  3. XM_016925086.4 → XP_016780575.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6
    Related
    ENSPTRP00000068353.1

  4. XM_054665132.2 → XP_054521107.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

  5. XM_054665125.2 → XP_054521100.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  6. XM_054665130.2 → XP_054521105.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

  7. XM_054665128.2 → XP_054521103.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

  8. XM_054665126.2 → XP_054521101.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  9. XM_054665124.2 → XP_054521099.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  10. XM_016925085.4 → XP_016780574.3  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  11. XM_054665127.2 → XP_054521102.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  12. XM_001156405.3 → XP_001156405.3  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2J8QEV6, A0A6D2YBA4, H2Q7B4

  13. XM_054665135.2 → XP_054521110.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

  14. XM_054665133.2 → XP_054521108.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

  15. XM_054665134.2 → XP_054521109.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A2I3RVM6

RNA

  1. XR_010150399.1 RNA Sequence

  2. XR_010150401.1 RNA Sequence

  3. XR_010150404.1 RNA Sequence

  4. XR_008538744.2 RNA Sequence

  5. XR_010150400.1 RNA Sequence

  6. XR_010150398.1 RNA Sequence

  7. XR_008538742.2 RNA Sequence

  8. XR_008538741.2 RNA Sequence

  9. XR_010150405.1 RNA Sequence

  10. XR_010150402.1 RNA Sequence

  11. XR_010150403.1 RNA Sequence

Nucleotide Protein
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