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SCARB1 scavenger receptor class B member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452359, updated on 3-Apr-2024

Summary

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Official Symbol
SCARB1provided by VGNC
Official Full Name
scavenger receptor class B member 1provided by VGNC
Primary source
VGNC:VGNC:8529
Locus tag
CK820_G0021514
See related
Ensembl:ENSPTRG00000005616
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (131605044..131692563, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (130221691..130308421, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene nuclear receptor corepressor 2 Neighboring gene uncharacterized LOC107967675 Neighboring gene uncharacterized LOC129136690 Neighboring gene uncharacterized LOC134807422 Neighboring gene uncharacterized LOC104001729 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ubiquitin C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of apoptotic cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    131605044..131692563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003314015.7 → XP_003314063.1  scavenger receptor class B member 1 isoform X3

    See identical proteins and their annotated locations for XP_003314063.1

    UniProtKB/TrEMBL
    A0A2J8MCJ4, A0A2J8MCP1, A0A6D2X7T4, K7C381
    Conserved Domains (1) summary
    pfam01130
    Location:16 → 446
    CD36; CD36 family

  2. XM_509475.9 → XP_509475.3  scavenger receptor class B member 1 isoform X4

    See identical proteins and their annotated locations for XP_509475.3

    UniProtKB/TrEMBL
    A0A2J8MCK7, A0A2J8MCP1, A0A6D2VSI5, H2Q765, K7DEE3
    Related
    ENSPTRP00000009553.5
    Conserved Domains (1) summary
    pfam01130
    Location:16 → 446
    CD36; CD36 family

  3. XM_063785289.1 → XP_063641359.1  scavenger receptor class B member 1 isoform X8

  4. XM_054664701.2 → XP_054520676.1  scavenger receptor class B member 1 isoform X7

  5. XM_063785288.1 → XP_063641358.1  scavenger receptor class B member 1 isoform X6

  6. XM_063785287.1 → XP_063641357.1  scavenger receptor class B member 1 isoform X5

  7. XM_054664702.2 → XP_054520677.1  scavenger receptor class B member 1 isoform X7

  8. XM_063785290.1 → XP_063641360.1  scavenger receptor class B member 1 isoform X9

  9. XM_063785286.1 → XP_063641356.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8MCJ4, A0A6D2X7T4, K7C381

  10. XM_009426552.5 → XP_009424827.2  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MCP1
    Conserved Domains (1) summary
    pfam01130
    Location:18 → 446
    CD36; CD36 family

  11. XM_054664700.2 → XP_054520675.1  scavenger receptor class B member 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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