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ITGB7 integrin subunit beta 7 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451934, updated on 3-Apr-2024

Summary

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Official Symbol
ITGB7provided by VGNC
Official Full Name
integrin subunit beta 7provided by VGNC
Primary source
VGNC:VGNC:5437
Locus tag
CK820_G0039545
See related
Ensembl:ENSPTRG00000005006
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (42659003..42675090)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (41332792..41348995)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene sperm mitochondrial-associated cysteine-rich protein Neighboring gene retinoic acid receptor gamma Neighboring gene zinc finger protein 740 Neighboring gene cysteine sulfinic acid decarboxylase Neighboring gene eukaryotic initiation factor 4A-I-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-7
Names
integrin, beta 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    42659003..42675090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001141622.7 → XP_001141622.1  integrin beta-7

    See identical proteins and their annotated locations for XP_001141622.1

    UniProtKB/TrEMBL
    A0A2I3SCU5, A0A2I3TDP7, A0A2J8KD63, A0A6D2XZ62
    Related
    ENSPTRP00000087370.1
    Conserved Domains (4) summary
    smart00187
    Location:50 → 476
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:645 → 717
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:747 → 790
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:473 → 654
    exchanger_TraA; outer membrane exchange protein TraA

  2. XM_054664211.2 → XP_054520186.1  integrin beta-7

    UniProtKB/TrEMBL
    A0A2I3TDP7, A0A2J8KD63, A0A6D2XZ62

  3. XM_009425333.5 → XP_009423608.1  integrin beta-7

    See identical proteins and their annotated locations for XP_009423608.1

    UniProtKB/TrEMBL
    A0A2I3SCU5, A0A2I3TDP7, A0A2J8KD63, A0A6D2XZ62
    Related
    ENSPTRP00000074858.1
    Conserved Domains (4) summary
    smart00187
    Location:50 → 476
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:645 → 717
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:747 → 790
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:473 → 654
    exchanger_TraA; outer membrane exchange protein TraA
Nucleotide Protein
Heading Accession and Version

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