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VDR vitamin D receptor [ Pan troglodytes (chimpanzee) ]

Gene ID: 451858, updated on 3-Apr-2024

Summary

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Official Symbol
VDRprovided by VGNC
Official Full Name
vitamin D receptorprovided by VGNC
Primary source
VGNC:VGNC:57800
Locus tag
CK820_G0026952
See related
Ensembl:ENSPTRG00000042814
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (47950827..48013557)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (46634176..46697413)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene collagen type II alpha 1 chain Neighboring gene transmembrane protein 106C Neighboring gene uncharacterized LOC134807447 Neighboring gene histone deacetylase 7 Neighboring gene solute carrier family 48 member 1 Neighboring gene Rap guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC134807477

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vitamin D response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitamin D3 receptor
Names
vitamin D (1,25- dihydroxyvitamin D3) receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    47950827..48013557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063785699.1 → XP_063641769.1  vitamin D3 receptor isoform X3

  2. XM_016923547.4 → XP_016779036.1  vitamin D3 receptor isoform X2

    UniProtKB/TrEMBL
    A0A2J8LQJ2
    Conserved Domains (2) summary
    cd06933
    Location:124 → 426
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:16 → 122
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  3. XM_024347889.3 → XP_024203657.1  vitamin D3 receptor isoform X2

    UniProtKB/TrEMBL
    A0A2J8LQJ2
    Conserved Domains (2) summary
    cd06933
    Location:124 → 426
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:16 → 122
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  4. XM_063785697.1 → XP_063641767.1  vitamin D3 receptor isoform X2

    UniProtKB/TrEMBL
    A0A2J8LQJ2

  5. XM_063785698.1 → XP_063641768.1  vitamin D3 receptor isoform X2

    UniProtKB/TrEMBL
    A0A2J8LQJ2

  6. XM_016923546.4 → XP_016779035.1  vitamin D3 receptor isoform X1

    UniProtKB/TrEMBL
    A0A2J8LQH9, A0A6D2XCP9, K7BXK6
    Related
    ENSPTRP00000084220.1
    Conserved Domains (2) summary
    cd06933
    Location:174 → 476
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:66 → 172
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
Nucleotide Protein
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