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CNTN1 contactin 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451836, updated on 29-Mar-2024

Summary

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Official Symbol
CNTN1provided by VGNC
Official Full Name
contactin 1provided by VGNC
Primary source
VGNC:VGNC:5342
Locus tag
CK820_G0027067
See related
Ensembl:ENSPTRG00000004834
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (54793117..54957711, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (53461394..53840274, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107967765 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene methionine aminopeptidase 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations in contactin-1, a neural adhesion and neuromuscular junction protein, cause a familial form of lethal congenital myopathy. Compton AG, et al. Am J Hum Genet, 2008 Dec. PMID 19026398, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    54793117..54957711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_509005.9 → XP_509005.2  contactin-1 isoform X1

    See identical proteins and their annotated locations for XP_509005.2

    UniProtKB/TrEMBL
    A0A2I3TL46, A0A2J8LR59, A0A6D2XZP0, H2R3X0
    Conserved Domains (8) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811 → 893
    fn3; Fibronectin type III domain
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  2. XM_016923638.4 → XP_016779127.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SBJ2, A0A2J8LR30, A0A6D2Y8Q4, H2R3X0
    Related
    ENSPTRP00000074415.1
    Conserved Domains (8) summary
    cd05727
    Location:123 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:29 → 121
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:230 → 317
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:418 → 490
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:599 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cd04970
    Location:509 → 590
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:321 → 397
    Ig; Immunoglobulin domain

  3. XM_003952220.6 → XP_003952269.1  contactin-1 isoform X3

    See identical proteins and their annotated locations for XP_003952269.1

    UniProtKB/TrEMBL
    A0A2I3T5R0, A0A2I3T7M1, A0A2J8LR27, A0A6D2W0A0
    Related
    ENSPTRP00000084878.1
    Conserved Domains (6) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd04970
    Location:520 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
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