MMP13 matrix metallopeptidase 13 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: MMP13provided by VGNC
Official Full Name: matrix metallopeptidase 13provided by VGNC
Primary source: VGNC:VGNC:1095
Locus tag: CK820_G0031076
See related: Ensembl:ENSPTRG00000004222
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	9	NC_072407.2 (104994621..105010478, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	11	NC_072409.1 (104223893..104239747, complement)

Chromosome 9 - NC_072407.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

PMC64850P1 (e-PCR)
- UniSTS:273422

D11S3989 (e-PCR)
- UniSTS:81949

GDB:632948 (e-PCR)
- UniSTS:158504

GDB:632950 (e-PCR)
- UniSTS:158505

PMC125702P1 (e-PCR)
- UniSTS:270507

PMC125702P2 (e-PCR)
- UniSTS:270508

NoName (e-PCR)
- UniSTS:482030

STS-X75308 (e-PCR)
- UniSTS:33275

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables metalloendopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in collagen catabolic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in extracellular matrix organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in proteolysis	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagenase 3

Names: matrix metallopeptidase 13 (collagenase 3); matrix metalloproteinase 13

XP_001154361.1

EC 3.4.24.-

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

104994621..105010478 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001154361.6 → XP_001154361.1 collagenase 3

UniProtKB/TrEMBL

A0A2I3RK76, A0A2J8LBN2, A0A2J8LBP5, A0A6D2Y599, A0A6D2Y9U5, H2Q4N4

Related

ENSPTRP00000007265.6

Conserved Domains (3) summary

cd00094
Location:281 → 471

HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

pfam00413
Location:112 → 267

Peptidase_M10; Matrixin

pfam01471
Location:32 → 91

PG_binding_1; Putative peptidoglycan binding domain