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GATA3 GATA binding protein 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 450296, updated on 3-Apr-2024

Summary

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Official Symbol
GATA3provided by VGNC
Official Full Name
GATA binding protein 3provided by VGNC
Primary source
VGNC:VGNC:3862
Locus tag
CK820_G0034811
See related
Ensembl:ENSPTRG00000023695
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (20895934..20925572)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (11240318..11269933)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC107976909 Neighboring gene uncharacterized LOC107976910 Neighboring gene pre-mRNA-splicing factor 38A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trans-acting T-cell-specific transcription factor GATA-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    20895934..20925572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063781350.1 → XP_063637420.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KYX2

  2. XM_016962624.4 → XP_016818113.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KYY7, A0A6D2WHV1, H2R285
    Related
    ENSPTRP00000064658.1
    Conserved Domains (2) summary
    cd00202
    Location:317 → 367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cl27975
    Location:1 → 261
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  3. XM_063781348.1 → XP_063637418.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KYX2

  4. XM_016962623.4 → XP_016818112.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KYY7, A0A6D2WHV1, H2R285
    Related
    ENSPTRP00000066548.1
    Conserved Domains (2) summary
    cd00202
    Location:317 → 367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cl27975
    Location:1 → 261
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  5. XM_009457913.5 → XP_009456188.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

    See identical proteins and their annotated locations for XP_009456188.1

    UniProtKB/TrEMBL
    A0A2J8KYX2
    Conserved Domains (2) summary
    cd00202
    Location:316 → 366
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cl27975
    Location:1 → 244
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  6. XM_507651.9 → XP_507651.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

    See identical proteins and their annotated locations for XP_507651.1

    UniProtKB/TrEMBL
    A0A2J8KYY7, A0A6D2WHV1, H2R285
    Related
    ENSPTRP00000043539.2
    Conserved Domains (2) summary
    cd00202
    Location:317 → 367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cl27975
    Location:1 → 261
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  7. XM_063781347.1 → XP_063637417.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A2J8KYY7, A0A6D2WHV1, H2R285

  8. XM_063781349.1 → XP_063637419.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

    UniProtKB/TrEMBL
    A0A2J8KYX2
Nucleotide Protein
Heading Accession and Version

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