SMAD1 SMAD family member 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SMAD1provided by VGNC
Official Full Name: SMAD family member 1provided by VGNC
Primary source: VGNC:VGNC:737
Locus tag: CK820_G0016844
See related: Ensembl:ENSPTRG00000016485
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: MADH1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	3	NC_072401.2 (147269990..147348246)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	4	NC_072402.1 (147229410..147306671)

Chromosome 3 - NC_072401.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

SHGC-143047 (e-PCR)
- UniSTS:171776

D4S2549E (e-PCR)
- UniSTS:64289

RH103506 (e-PCR)
- UniSTS:97831

SHGC-79334 (e-PCR)
- UniSTS:103240

B327ZG1 (e-PCR)
- UniSTS:82276

STS-Z39684 (e-PCR)
- UniSTS:49341

RH102368 (e-PCR)
- UniSTS:96702

ksks229 (e-PCR)
- UniSTS:514263

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables I-SMAD binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in BMP signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed
involved_in SMAD protein signal transduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in anatomical structure morphogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in transforming growth factor beta receptor signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of heteromeric SMAD protein complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: mothers against decapentaplegic homolog 1

Names: mothers against decapentaplegic-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

147269990..147348246

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054683412.2 → XP_054539387.1 mothers against decapentaplegic homolog 1 isoform X1

UniProtKB/TrEMBL

K6ZWM5
XM_001148535.7 → XP_001148535.3 mothers against decapentaplegic homolog 1 isoform X1

UniProtKB/TrEMBL

K6ZWM5
XM_054683414.2 → XP_054539389.1 mothers against decapentaplegic homolog 1 isoform X2