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PTPN6 protein tyrosine phosphatase non-receptor type 6 [ Gallus gallus (chicken) ]

Gene ID: 427947, updated on 3-Apr-2024

Summary

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Symbol
PTPN6provided by CGNC
Full Name
protein tyrosine phosphatase non-receptor type 6provided by CGNC
Primary source
CGNC:10812
See related
Ensembl:ENSGALG00010023472
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (77277265..77297608)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (77477643..77498031)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene atrophin 1 Neighboring gene U7 small nuclear RNA Neighboring gene C12orf57 homolog Neighboring gene prohibitin 2 Neighboring gene EMG1, N1-specific pseudouridine methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 6
NP_001026655.2
XP_015149007.2
XP_040557352.1
XP_046764525.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031484.2 → NP_001026655.2  tyrosine-protein phosphatase non-receptor type 6

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000015
    UniProtKB/TrEMBL
    F1N843, Q5F3I5
    Related
    ENSGALP00010034779.1, ENSGALT00010057186.1
    Conserved Domains (3) summary
    cd09931
    Location:109 → 226
    SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd10340
    Location:3 → 101
    SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd14606
    Location:264 → 529
    PTPc-N6; catalytic domain of tyrosine-protein phosphatase non-receptor type 6

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    77277265..77297608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293521.4 → XP_015149007.2  tyrosine-protein phosphatase non-receptor type 6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2UCN1, Q5F3I5
    Related
    ENSGALP00010034788.1, ENSGALT00010057197.1
    Conserved Domains (3) summary
    cd09931
    Location:111 → 228
    SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd10340
    Location:6 → 103
    SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    smart00194
    Location:256 → 525
    PTPc; Protein tyrosine phosphatase, catalytic domain

  2. XM_040701418.2 → XP_040557352.1  tyrosine-protein phosphatase non-receptor type 6 isoform X2

    Conserved Domains (3) summary
    cd09931
    Location:111 → 228
    SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd10340
    Location:6 → 103
    SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cl28904
    Location:266 → 470
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    77477643..77498031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908569.1 → XP_046764525.1  tyrosine-protein phosphatase non-receptor type 6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2UCN1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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