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HDAC7 histone deacetylase 7 [ Gallus gallus (chicken) ]

Gene ID: 426885, updated on 3-Apr-2024

Summary

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Official Symbol
HDAC7provided by CGNC
Official Full Name
histone deacetylase 7provided by CGNC
Primary source
CGNC:4743
See related
Ensembl:ENSGALG00010023273
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HDAC7A
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 34
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (542140..582796)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (468127..530530)

Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene Rac GTPase activating protein 1 Neighboring gene uncharacterized LOC121108087 Neighboring gene Twist homlog 3 Neighboring gene solute carrier family 48 member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 7
Names
histone deacetylase 7A
NP_001026573.1
XP_046790182.1
XP_046790183.1
XP_046790184.1
XP_046790185.1
XP_046790186.1
XP_046790187.1
XP_046790188.1
XP_046790189.1
XP_046790190.1
XP_046790191.1
XP_046790192.1
XP_046790193.1
XP_046790194.1
XP_046790195.1
XP_046790196.1
XP_046790197.1
XP_046790198.1
XP_046790199.1
XP_046790200.1
XP_046790201.1
XP_046790202.1
XP_046790203.1
XP_046790204.1
XP_046790205.1
XP_046790206.1
XP_046790207.1
XP_046790208.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031402.2 → NP_001026573.1  histone deacetylase 7

    See identical proteins and their annotated locations for NP_001026573.1

    Status: VALIDATED

    Source sequence(s)
    AJ730897, AJ851468, BG625567, BU305106, BU422874
    UniProtKB/TrEMBL
    A0A8V0ZSG8, Q5F432
    Related
    ENSGALP00010034494.1, ENSGALT00010056752.1
    Conserved Domains (2) summary
    cd10008
    Location:512 → 889
    HDAC7; Histone deacetylase 7
    cl23765
    Location:18 → 92
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    542140..582796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    468127..530530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046934232.1 → XP_046790188.1  histone deacetylase 7 isoform X7

  2. XM_046934233.1 → XP_046790189.1  histone deacetylase 7 isoform X8

  3. XM_046934236.1 → XP_046790192.1  histone deacetylase 7 isoform X9

  4. XM_046934241.1 → XP_046790197.1  histone deacetylase 7 isoform X14

  5. XM_046934242.1 → XP_046790198.1  histone deacetylase 7 isoform X15

  6. XM_046934251.1 → XP_046790207.1  histone deacetylase 7 isoform X16

  7. XM_046934230.1 → XP_046790186.1  histone deacetylase 7 isoform X5

  8. XM_046934231.1 → XP_046790187.1  histone deacetylase 7 isoform X6

  9. XM_046934245.1 → XP_046790201.1  histone deacetylase 7 isoform X1

  10. XM_046934240.1 → XP_046790196.1  histone deacetylase 7 isoform X13

  11. XM_046934228.1 → XP_046790184.1  histone deacetylase 7 isoform X3

  12. XM_046934229.1 → XP_046790185.1  histone deacetylase 7 isoform X4

  13. XM_046934246.1 → XP_046790202.1  histone deacetylase 7 isoform X1

  14. XM_046934237.1 → XP_046790193.1  histone deacetylase 7 isoform X10

  15. XM_046934235.1 → XP_046790191.1  histone deacetylase 7 isoform X9

  16. XM_046934234.1 → XP_046790190.1  histone deacetylase 7 isoform X9

  17. XM_046934226.1 → XP_046790182.1  histone deacetylase 7 isoform X1

  18. XM_046934227.1 → XP_046790183.1  histone deacetylase 7 isoform X2

  19. XM_046934243.1 → XP_046790199.1  histone deacetylase 7 isoform X1

  20. XM_046934250.1 → XP_046790206.1  histone deacetylase 7 isoform X2

  21. XM_046934252.1 → XP_046790208.1  histone deacetylase 7 isoform X17

    UniProtKB/TrEMBL
    Q5F432

  22. XM_046934238.1 → XP_046790194.1  histone deacetylase 7 isoform X11

  23. XM_046934239.1 → XP_046790195.1  histone deacetylase 7 isoform X12

  24. XM_046934249.1 → XP_046790205.1  histone deacetylase 7 isoform X1

  25. XM_046934248.1 → XP_046790204.1  histone deacetylase 7 isoform X1

  26. XM_046934244.1 → XP_046790200.1  histone deacetylase 7 isoform X1

  27. XM_046934247.1 → XP_046790203.1  histone deacetylase 7 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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