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ATF1 activating transcription factor 1 [ Gallus gallus (chicken) ]

Gene ID: 426873, updated on 3-Apr-2024

Summary

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Symbol
ATF1provided by CGNC
Full Name
activating transcription factor 1provided by CGNC
Primary source
CGNC:4567
See related
Ensembl:ENSGALG00010022397
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 34
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (300918..314494, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (248612..262193, complement)

Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 7A Neighboring gene transmembrane protease, serine 12 Neighboring gene disco interacting protein 2 homolog B Neighboring gene microRNA 1668 Neighboring gene La ribonucleoprotein domain family member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    300918..314494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015300261.4 → XP_015155747.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Related
    ENSGALP00010032892.1, ENSGALT00010054452.1
    Conserved Domains (2) summary
    cd14690
    Location:225 → 279
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:60 → 95
    pKID; pKID domain

  2. XM_424481.8 → XP_424481.3  cyclic AMP-dependent transcription factor ATF-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:261 → 315
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:96 → 131
    pKID; pKID domain

  3. XM_046904983.1 → XP_046760939.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  4. XM_046904981.1 → XP_046760937.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZPY8
    Related
    ENSGALP00010032896.1, ENSGALT00010054456.1

  5. XM_040654826.2 → XP_040510760.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:233 → 287
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:68 → 103
    pKID; pKID domain

  6. XM_046904980.1 → XP_046760936.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZVJ7
    Related
    ENSGALP00010032888.1, ENSGALT00010054446.1

  7. XM_046904979.1 → XP_046760935.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZN47
    Related
    ENSGALP00010032884.1, ENSGALT00010054440.1

  8. XM_046904982.1 → XP_046760938.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZPY8

  9. XM_046904984.1 → XP_046760940.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

  10. XM_015300262.4 → XP_015155748.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:225 → 279
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:60 → 95
    pKID; pKID domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    248612..262193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040693942.2 → XP_040549876.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:225 → 279
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:60 → 95
    pKID; pKID domain

  2. XM_040693940.2 → XP_040549874.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:261 → 315
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:96 → 131
    pKID; pKID domain

  3. XM_046934313.1 → XP_046790269.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  4. XM_046934310.1 → XP_046790266.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZPY8

  5. XM_040693941.2 → XP_040549875.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:233 → 287
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:68 → 103
    pKID; pKID domain

  6. XM_046934309.1 → XP_046790265.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZVJ7

  7. XM_046934308.1 → XP_046790264.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZN47

  8. XM_046934311.1 → XP_046790267.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZPY8

  9. XM_046934314.1 → XP_046790270.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

  10. XM_040693944.2 → XP_040549878.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHT7
    Conserved Domains (2) summary
    cd14690
    Location:225 → 279
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:60 → 95
    pKID; pKID domain
Nucleotide Protein
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