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CAPN10 calpain 10 [ Gallus gallus (chicken) ]

Gene ID: 424945, updated on 3-Apr-2024

Summary

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Official Symbol
CAPN10provided by CGNC
Official Full Name
calpain 10provided by CGNC
Primary source
CGNC:66488
See related
Ensembl:ENSGALG00010017958
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (15394503..15406406, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (15187978..15200078, complement)

Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 2, subfamily AB, polypeptide 2 Neighboring gene cytochrome P450, family 2, subfamily AB, polypeptide 1 Neighboring gene arginyl aminopeptidase like 1 Neighboring gene uncharacterized LOC107054095 Neighboring gene ATP binding cassette subfamily C member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-10
XP_015147055.2
XP_040534687.1
XP_040534688.1
XP_040561629.1
XP_046754799.1
XP_046780342.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    15394503..15406406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040705695.2 → XP_040561629.1  calpain-10 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z4E9, A0A8V0ZBD0
    Related
    ENSGALP00010025798.1, ENSGALT00010043403.1
    Conserved Domains (3) summary
    cd00044
    Location:12 → 304
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd00214
    Location:403 → 542
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cl00165
    Location:317 → 385
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

  2. XM_046898843.1 → XP_046754799.1  calpain-10 isoform X2

  3. XM_015291569.4 → XP_015147055.2  calpain-10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBD0
    Related
    ENSGALP00010025795.1, ENSGALT00010043396.1
    Conserved Domains (2) summary
    cd00044
    Location:12 → 304
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd00214
    Location:514 → 653
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    15187978..15200078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678754.2 → XP_040534688.1  calpain-10 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZBD0
    Conserved Domains (3) summary
    cd00044
    Location:12 → 304
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd00214
    Location:403 → 542
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cl00165
    Location:317 → 385
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

  2. XM_046924386.1 → XP_046780342.1  calpain-10 isoform X2

  3. XM_040678753.2 → XP_040534687.1  calpain-10 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZBD0
    Conserved Domains (2) summary
    cd00044
    Location:12 → 304
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cd00214
    Location:514 → 653
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
Nucleotide Protein
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