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GTF2B general transcription factor IIB [ Gallus gallus (chicken) ]

Gene ID: 424518, updated on 3-Apr-2024

Summary

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Symbol
GTF2Bprovided by CGNC
Full Name
general transcription factor IIBprovided by CGNC
Primary source
CGNC:4657
See related
Ensembl:ENSGALG00010022930
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (14883195..14900803)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (14890523..14908151)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 8 family member C Neighboring gene uncharacterized LOC107056693 Neighboring gene kynurenine aminotransferase 3 Neighboring gene protein kinase N2 Neighboring gene collagen alpha-1(III) chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIB
XP_015146132.1
XP_025009028.1
XP_040533249.1
XP_040533250.1
XP_040533251.1
XP_046754243.1
XP_046778980.1
XP_422356.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14883195..14900803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046898287.1 → XP_046754243.1  transcription initiation factor IIB isoform X3

    UniProtKB/TrEMBL
    A0A1D5P699

  2. XM_025153260.3 → XP_025009028.1  transcription initiation factor IIB isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZTE0
    Conserved Domains (1) summary
    COG1405
    Location:42 → 318
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

  3. XM_015290646.4 → XP_015146132.1  transcription initiation factor IIB isoform X3

    UniProtKB/TrEMBL
    A0A1D5P699, A0A8V0ZTE0
    Related
    ENSGALP00010033784.1, ENSGALT00010055804.1
    Conserved Domains (1) summary
    COG1405
    Location:10 → 286
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

  4. XM_422356.8 → XP_422356.3  transcription initiation factor IIB isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZTE0, F1NXP2
    Related
    ENSGALP00010033787.1, ENSGALT00010055808.1
    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14890523..14908151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046923024.1 → XP_046778980.1  transcription initiation factor IIB isoform X3

    UniProtKB/TrEMBL
    A0A1D5P699

  2. XM_040677315.2 → XP_040533249.1  transcription initiation factor IIB isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZTE0
    Conserved Domains (1) summary
    COG1405
    Location:42 → 318
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

  3. XM_040677317.2 → XP_040533251.1  transcription initiation factor IIB isoform X3

    UniProtKB/TrEMBL
    A0A1D5P699, A0A8V0ZTE0
    Conserved Domains (1) summary
    COG1405
    Location:10 → 286
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]

  4. XM_040677316.2 → XP_040533250.1  transcription initiation factor IIB isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZTE0, F1NXP2
    Conserved Domains (1) summary
    COG1405
    Location:14 → 290
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Nucleotide Protein
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