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ITGB6 integrin subunit beta 6 [ Gallus gallus (chicken) ]

Gene ID: 424191, updated on 5-Mar-2024

Summary

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Symbol
ITGB6provided by CGNC
Full Name
integrin subunit beta 6provided by CGNC
Primary source
CGNC:8461
See related
Ensembl:ENSGALG00010021106
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (21400309..21449713)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (21304794..21365264)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif single stranded interacting protein 1 Neighboring gene uncharacterized LOC112532765 Neighboring gene uncharacterized LOC121111231 Neighboring gene phospholipase A2 receptor 1 Neighboring gene uncharacterized LOC112532831 Neighboring gene lymphocyte antigen 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin alphav-beta6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-6
Names
integrin, beta 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    21400309..21449713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046944102.1 → XP_046800058.1  integrin beta-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZG81
    Related
    ENSGALP00010030287.1, ENSGALT00010051096.1

  2. XM_004942824.5 → XP_004942881.2  integrin beta-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZG81
    Conserved Domains (1) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)

  3. XM_046944103.1 → XP_046800059.1  integrin beta-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZG81

  4. XM_015289714.4 → XP_015145200.2  integrin beta-6 isoform X2

    Conserved Domains (1) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)

  5. XM_040703828.2 → XP_040559762.1  integrin beta-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZG81
    Conserved Domains (1) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)

  6. XM_004942825.5 → XP_004942882.2  integrin beta-6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZG81
    Conserved Domains (1) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    21304794..21365264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046921988.1 → XP_046777944.1  integrin beta-6 isoform X1

  2. XM_046921989.1 → XP_046777945.1  integrin beta-6 isoform X1

  3. XM_040675518.2 → XP_040531452.1  integrin beta-6 isoform X1

    Conserved Domains (4) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:624 → 706
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:731 → 774
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    pfam18372
    Location:456 → 485
    I-EGF_1; Integrin beta epidermal growth factor like domain 1

  4. XM_040675520.2 → XP_040531454.1  integrin beta-6 isoform X1

    Conserved Domains (4) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:624 → 706
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:731 → 774
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    pfam18372
    Location:456 → 485
    I-EGF_1; Integrin beta epidermal growth factor like domain 1

  5. XM_040675519.2 → XP_040531453.1  integrin beta-6 isoform X1

    Conserved Domains (4) summary
    smart00187
    Location:30 → 454
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:624 → 706
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:731 → 774
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    pfam18372
    Location:456 → 485
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
Nucleotide Protein
Heading Accession and Version

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