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PDE1A phosphodiesterase 1A [ Gallus gallus (chicken) ]

Gene ID: 424116, updated on 3-Apr-2024

Summary

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Symbol
PDE1Aprovided by CGNC
Full Name
phosphodiesterase 1Aprovided by CGNC
Primary source
CGNC:6747
See related
Ensembl:ENSGALG00010022334
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (13511241..13709724)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (13435721..13637744)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC424111 Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene isocitrate dehydrogenase (NADP(+)) 1, cytosolic Neighboring gene DnaJ heat shock protein family (Hsp40) member C10 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1C Neighboring gene sperm specific antigen 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression and protein localization of calmodulin-dependent phosphodiesterase during ontogenesis of chick retina. Deplano S, et al. J Neurosci Res, 2008 Apr. PMID 18041092

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
Names
phosphodiesterase 1A, calmodulin-dependent
XP_040531775.1
XP_040531776.1
XP_040531777.1
XP_040531778.1
XP_040531782.1
XP_040531783.1
XP_040531784.1
XP_040559624.1
XP_040559625.1
XP_040559626.1
XP_040559631.1
XP_040559632.1
XP_040559633.1
XP_040559634.1
XP_046777755.1
XP_046777756.1
XP_046777757.1
XP_046777758.1
XP_046777759.1
XP_046777760.1
XP_046799813.1
XP_046799814.1
XP_046799815.1
XP_046799816.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13511241..13709724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046943860.1 → XP_046799816.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

  2. XM_046943857.1 → XP_046799813.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

  3. XM_040703691.2 → XP_040559625.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (1) summary
    cd00077
    Location:223 → 394
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  4. XM_040703697.2 → XP_040559631.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  5. XM_046943858.1 → XP_046799814.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

  6. XM_040703692.2 → XP_040559626.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  7. XM_046943859.1 → XP_046799815.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZMY9
    Related
    ENSGALP00010032827.1, ENSGALT00010054349.1

  8. XM_040703690.2 → XP_040559624.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

    Conserved Domains (1) summary
    cd00077
    Location:299 → 470
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  9. XM_040703698.2 → XP_040559632.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZHM7
    Conserved Domains (1) summary
    cd00077
    Location:299 → 470
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  10. XM_040703699.2 → XP_040559633.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHM7, A0A8V0ZVD4
    Related
    ENSGALP00010032816.1, ENSGALT00010054331.1
    Conserved Domains (1) summary
    cd00077
    Location:202 → 373
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  11. XM_040703700.2 → XP_040559634.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X8

    UniProtKB/TrEMBL
    A0A8V0ZHM7, A0A8V0ZPR2
    Related
    ENSGALP00010032819.1, ENSGALT00010054337.1
    Conserved Domains (1) summary
    cd00077
    Location:202 → 373
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

RNA

  1. XR_006939851.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13435721..13637744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046921803.1 → XP_046777759.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

  2. XM_046921799.1 → XP_046777755.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

  3. XM_040675843.2 → XP_040531777.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (2) summary
    pfam00233
    Location:223 → 444
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:82 → 138
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. XM_040675848.2 → XP_040531782.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (2) summary
    pfam00233
    Location:219 → 440
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:78 → 134
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  5. XM_046921800.1 → XP_046777756.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

  6. XM_040675844.2 → XP_040531778.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZMY5
    Conserved Domains (2) summary
    pfam00233
    Location:219 → 440
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:78 → 134
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  7. XM_046921802.1 → XP_046777758.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X7

  8. XM_040675842.2 → XP_040531776.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X9

    UniProtKB/TrEMBL
    A0A8V0ZQ79
    Conserved Domains (1) summary
    cd00077
    Location:299 → 470
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  9. XM_046921801.1 → XP_046777757.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

  10. XM_040675841.2 → XP_040531775.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

    Conserved Domains (1) summary
    cd00077
    Location:299 → 470
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  11. XM_040675849.2 → XP_040531783.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZHM7
    Conserved Domains (1) summary
    cd00077
    Location:299 → 470
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  12. XM_040675850.2 → XP_040531784.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHM7
    Conserved Domains (2) summary
    pfam00233
    Location:202 → 423
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:61 → 117
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  13. XM_046921804.1 → XP_046777760.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X8

RNA

  1. XR_006935296.1 RNA Sequence

Nucleotide Protein Strain
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