TAF5 TATA-box binding protein associated factor 5 [Gallus gallus (chicken)] - Gene

Summary

Symbol: TAF5provided by CGNC
Full Name: TATA-box binding protein associated factor 5provided by CGNC
Primary source: CGNC:52068
See related: Ensembl:ENSGALG00010021112
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	6	NC_052537.1 (24383454..24394488)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	6	NC_052578.1 (24274702..24285736)

Chromosome 6 - NC_052537.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II general transcription initiation factor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in transcription initiation at RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of transcription factor TFIID complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription initiation factor TFIID subunit 5

Names: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001031235.2 → NP_001026406.1 transcription initiation factor TFIID subunit 5

See identical proteins and their annotated locations for NP_001026406.1

Status: PROVISIONAL

Source sequence(s)

JAENSK010000232

UniProtKB/TrEMBL

E1C4U3, Q5F3I7

Related

ENSGALP00010030301.1, ENSGALT00010051110.1

Conserved Domains (4) summary

cd08044
Location:196 → 328

TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

COG2319
Location:444 → 725

WD40; WD40 repeat [General function prediction only]

cd00200
Location:457 → 727

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:458 → 526

7WD40; WD40 repeat [structural motif]