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RFC1 replication factor C subunit 1 [ Gallus gallus (chicken) ]

Gene ID: 422788, updated on 3-Apr-2024

Summary

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Symbol
RFC1provided by CGNC
Full Name
replication factor C subunit 1provided by CGNC
Primary source
CGNC:51823
See related
Ensembl:ENSGALG00010013477
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (68833451..68871520)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (68819023..68857119)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L9 Neighboring gene klotho beta Neighboring gene WD repeat domain 19 Neighboring gene kelch like family member 5 Neighboring gene transmembrane protein 156

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp unloader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication factor C subunit 1
Names
replication factor C (activator 1) 1, 145kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006456.2 → NP_001006456.2  replication factor C subunit 1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000074
    UniProtKB/TrEMBL
    A0A8V0YEG0, Q5ZKU2
    Related
    ENSGALP00010019204.1, ENSGALT00010032453.1
    Conserved Domains (4) summary
    PTZ00121
    Location:14 → 373
    PTZ00121; MAEBL; Provisional
    COG5275
    Location:268 → 503
    COG5275; BRCT domain type II [General function prediction only]
    PRK04195
    Location:582 → 998
    PRK04195; replication factor C large subunit; Provisional
    cd17752
    Location:399 → 477
    BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    68833451..68871520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046940184.1 → XP_046796140.1  replication factor C subunit 1 isoform X1

  2. XM_015285650.4 → XP_015141136.3  replication factor C subunit 1 isoform X2

    UniProtKB/TrEMBL
    Q5ZKU2
    Conserved Domains (4) summary
    PTZ00121
    Location:14 → 373
    PTZ00121; MAEBL; Provisional
    COG5275
    Location:268 → 503
    COG5275; BRCT domain type II [General function prediction only]
    PRK04195
    Location:582 → 999
    PRK04195; replication factor C large subunit; Provisional
    cd17752
    Location:399 → 477
    BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins

  3. XM_015285652.4 → XP_015141138.3  replication factor C subunit 1 isoform X3

    UniProtKB/TrEMBL
    Q5ZKU2
    Conserved Domains (4) summary
    PTZ00121
    Location:14 → 358
    PTZ00121; MAEBL; Provisional
    COG5275
    Location:253 → 488
    COG5275; BRCT domain type II [General function prediction only]
    PRK04195
    Location:567 → 984
    PRK04195; replication factor C large subunit; Provisional
    cd17752
    Location:384 → 462
    BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins

  4. XM_040699020.2 → XP_040554954.1  replication factor C subunit 1 isoform X4

    UniProtKB/TrEMBL
    Q5ZKU2
    Conserved Domains (4) summary
    PTZ00121
    Location:14 → 358
    PTZ00121; MAEBL; Provisional
    COG5275
    Location:253 → 488
    COG5275; BRCT domain type II [General function prediction only]
    PRK04195
    Location:567 → 983
    PRK04195; replication factor C large subunit; Provisional
    cd17752
    Location:384 → 462
    BRCT_RFC1; BRCT domain of replication factor C subunit 1 (RFC1) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    68819023..68857119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916257.1 → XP_046772213.1  replication factor C subunit 1 isoform X1

  2. XM_046916258.1 → XP_046772214.1  replication factor C subunit 1 isoform X2

  3. XM_046916259.1 → XP_046772215.1  replication factor C subunit 1 isoform X3

  4. XM_046916260.1 → XP_046772216.1  replication factor C subunit 1 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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