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CAPN9 calpain 9 [ Gallus gallus (chicken) ]

Gene ID: 421544, updated on 5-Mar-2024

Summary

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Official Symbol
CAPN9provided by CGNC
Official Full Name
calpain 9provided by CGNC
Primary source
CGNC:8457
See related
Ensembl:ENSGALG00010007771
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (40157407..40185674)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (40055577..40083826)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 2 Neighboring gene angiotensinogen Neighboring gene C1orf198 homolog Neighboring gene uncharacterized LOC121110372 Neighboring gene microRNA mir-12260 Neighboring gene tetratricopeptide repeat domain 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression and effect of Calpain9 gene genetic polymorphism on slaughter indicators and intramuscular fat content in chickens. Cui HX, et al. Poult Sci, 2018 Oct 1. PMID 29945255, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-9
XP_040523823.1
XP_040523824.1
XP_040553593.1
XP_419585.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    40157407..40185674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_419585.8 → XP_419585.2  calpain-9 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XTV9, A0A8V0Y1R4
    Related
    ENSGALP00010010114.1, ENSGALT00010018477.1
    Conserved Domains (4) summary
    PTZ00184
    Location:518 → 657
    PTZ00184; calmodulin; Provisional
    pfam00648
    Location:43 → 335
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:349 → 491
    Calpain_III; Calpain large subunit, domain III
    cl08302
    Location:566 → 621
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_040697659.2 → XP_040553593.1  calpain-9 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XVU2
    Related
    ENSGALP00010010115.1, ENSGALT00010018479.1
    Conserved Domains (4) summary
    smart00230
    Location:29 → 342
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:522 → 550
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:522 → 662
    EFh_PEF; The penta-EF hand (PEF) family

RNA

  1. XR_005858269.2 RNA Sequence

  2. XR_005858268.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    40055577..40083826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040667890.2 → XP_040523824.1  calpain-9 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y1R4
    Conserved Domains (3) summary
    smart00230
    Location:29 → 342
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd16192
    Location:522 → 690
    EFh_PEF_CAPN9; Penta-EF hand, calcium binding motifs, found in calpain-9 (CAPN9)

  2. XM_040667889.2 → XP_040523823.1  calpain-9 isoform X1

    Conserved Domains (4) summary
    smart00230
    Location:29 → 342
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:522 → 550
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:522 → 662
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein Strain
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