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PDE1C phosphodiesterase 1C [ Gallus gallus (chicken) ]

Gene ID: 420752, updated on 3-Apr-2024

Summary

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Symbol
PDE1Cprovided by CGNC
Full Name
phosphodiesterase 1Cprovided by CGNC
Primary source
CGNC:9284
See related
Ensembl:ENSGALG00010019585
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (48102828..48398406)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (48149103..48444607)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene AVL9 cell migration associated Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene uncharacterized LOC121112047 Neighboring gene uncharacterized LOC121109547 Neighboring gene uncharacterized LOC112531728 Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene coiled-coil domain containing 129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; LOW QUALITY PROTEIN: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Names
phosphodiesterase 1C, calmodulin-dependent 70kDa
XP_040518597.1
XP_040518598.1
XP_040518599.1
XP_040518601.1
XP_040518602.1
XP_040518603.1
XP_040518605.1
XP_040518606.1
XP_040518607.1
XP_040518608.1
XP_040518610.1
XP_040518611.1
XP_040518612.1
XP_046768496.1
XP_046768497.1
XP_046768498.1
XP_046768499.1
XP_046768500.1
XP_046794095.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    48102828..48398406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046938139.1 → XP_046794095.1  LOW QUALITY PROTEIN: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

    Related
    ENSGALP00010028073.1, ENSGALT00010047378.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    48149103..48444607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046912540.1 → XP_046768496.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

  2. XM_040662663.2 → XP_040518597.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHM1
    Conserved Domains (1) summary
    cd00077
    Location:287 → 459
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  3. XM_040662672.2 → XP_040518606.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHM1
    Conserved Domains (1) summary
    cd00077
    Location:287 → 459
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  4. XM_040662664.2 → XP_040518598.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:248 → 420
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  5. XM_040662667.2 → XP_040518601.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZAW5
    Conserved Domains (1) summary
    cd00077
    Location:227 → 399
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  6. XM_040662677.2 → XP_040518611.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X12

    UniProtKB/TrEMBL
    A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:227 → 399
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  7. XM_040662669.2 → XP_040518603.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZAW5, A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:218 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  8. XM_040662665.2 → XP_040518599.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:248 → 420
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  9. XM_040662668.2 → XP_040518602.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZAW5
    Conserved Domains (1) summary
    cd00077
    Location:227 → 399
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  10. XM_046912541.1 → XP_046768497.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X8

  11. XM_040662671.2 → XP_040518605.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZAW5, A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:218 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  12. XM_040662676.2 → XP_040518610.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZHK1
    Conserved Domains (1) summary
    cd00077
    Location:227 → 399
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  13. XM_046912544.1 → XP_046768500.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

  14. XM_046912542.1 → XP_046768498.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X10

  15. XM_046912543.1 → XP_046768499.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

  16. XM_040662673.2 → XP_040518607.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZAX0
    Conserved Domains (1) summary
    cd00077
    Location:212 → 384
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  17. XM_040662678.2 → XP_040518612.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X13

    UniProtKB/TrEMBL
    A0A8V0Z480
    Conserved Domains (1) summary
    cd00077
    Location:114 → 286
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  18. XM_040662674.2 → XP_040518608.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X9

    UniProtKB/TrEMBL
    A0A8V0Z480
    Conserved Domains (1) summary
    cd00077
    Location:193 → 365
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
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