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TAF12 TATA-box binding protein associated factor 12 [ Gallus gallus (chicken) ]

Gene ID: 419585, updated on 3-Apr-2024

Summary

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Symbol
TAF12provided by CGNC
Full Name
TATA-box binding protein associated factor 12provided by CGNC
Primary source
CGNC:658
See related
Ensembl:ENSGALG00010015384
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (2623919..2629891)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (2392277..2398234)

Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene discoidin, CUB and LCCL domain-containing protein 1-like Neighboring gene glucocorticoid modulatory element binding protein 1 Neighboring gene U11 spliceosomal RNA Neighboring gene RAB42, member RAS oncogene family Neighboring gene mitochondrial fission regulator 1 like Neighboring gene selenoprotein N

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 12
Names
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030894.3 → NP_001026065.1  transcription initiation factor TFIID subunit 12

    See identical proteins and their annotated locations for NP_001026065.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000339
    UniProtKB/TrEMBL
    Q5ZKX3
    Conserved Domains (1) summary
    cd07981
    Location:58 → 126
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2623919..2629891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015297648.4 → XP_015153134.2  transcription initiation factor TFIID subunit 12 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YKN4, A0A8V0YS19
    Related
    ENSGALP00010021505.1, ENSGALT00010036950.1
    Conserved Domains (1) summary
    cd07981
    Location:109 → 177
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

  2. XM_046903553.1 → XP_046759509.1  transcription initiation factor TFIID subunit 12 isoform X2

    UniProtKB/TrEMBL
    Q5ZKX3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2392277..2398234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046931955.1 → XP_046787911.1  transcription initiation factor TFIID subunit 12 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YS19
Nucleotide Protein Strain
Heading Accession and Version

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