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MMP23A matrix metallopeptidase 23A (pseudogene) [ Gallus gallus (chicken) ]

Gene ID: 419407, updated on 5-Mar-2024

Summary

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Symbol
MMP23Aprovided by CGNC
Full Name
matrix metallopeptidase 23A (pseudogene)provided by CGNC
Primary source
CGNC:50988
See related
Ensembl:ENSGALG00010020187
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
MMP23B
Orthologs
human mouse all
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Genomic context

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See MMP23A in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (2022547..2039651, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (2049978..2071168, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC419404 Neighboring gene solute carrier family 35 member E2B Neighboring gene cell division cycle 2-like 1 (PITSLRE proteins) Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene Golgi integral membrane protein 4-like Neighboring gene fibronectin type III domain containing 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-23
Names
matrix metallopeptidase 23B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2022547..2039651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025142634.3 → XP_024998402.2  matrix metalloproteinase-23 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZC86
    Conserved Domains (4) summary
    smart00254
    Location:221 → 255
    ShKT; ShK toxin domain
    cd04278
    Location:53 → 220
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:283 → 287
    Ig; Ig strand B [structural motif]
    cl11960
    Location:275 → 343
    Ig; Immunoglobulin domain

  2. XM_004947398.5 → XP_004947455.2  matrix metalloproteinase-23 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZC86
    Conserved Domains (4) summary
    smart00254
    Location:231 → 265
    ShKT; ShK toxin domain
    cd04278
    Location:63 → 230
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:292 → 298
    Ig; Ig strand B [structural motif]
    cl11960
    Location:285 → 353
    Ig; Immunoglobulin domain

  3. XM_417569.6 → XP_417569.2  matrix metalloproteinase-23 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZC86, A0A8V0ZJP5
    Related
    ENSGALP00010028823.1, ENSGALT00010048760.1
    Conserved Domains (4) summary
    smart00254
    Location:265 → 299
    ShKT; ShK toxin domain
    cd04278
    Location:97 → 264
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:326 → 332
    Ig; Ig strand B [structural motif]
    cl11960
    Location:319 → 387
    Ig; Immunoglobulin domain

RNA

  1. XR_006931969.1 RNA Sequence

  2. XR_006931968.1 RNA Sequence

  3. XR_213526.5 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2049978..2071168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689057.2 → XP_040544991.1  matrix metalloproteinase-23 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZC86
    Conserved Domains (4) summary
    smart00254
    Location:221 → 255
    ShKT; ShK toxin domain
    cd04278
    Location:53 → 220
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:282 → 288
    Ig; Ig strand B [structural motif]
    cl11960
    Location:275 → 343
    Ig; Immunoglobulin domain

  2. XM_040689056.2 → XP_040544990.1  matrix metalloproteinase-23 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZC86
    Conserved Domains (4) summary
    smart00254
    Location:231 → 265
    ShKT; ShK toxin domain
    cd04278
    Location:63 → 230
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:292 → 298
    Ig; Ig strand B [structural motif]
    cl11960
    Location:285 → 353
    Ig; Immunoglobulin domain

  3. XM_040689055.2 → XP_040544989.1  matrix metalloproteinase-23 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZC86
    Conserved Domains (4) summary
    smart00254
    Location:265 → 299
    ShKT; ShK toxin domain
    cd04278
    Location:97 → 264
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:326 → 332
    Ig; Ig strand B [structural motif]
    cl11960
    Location:319 → 387
    Ig; Immunoglobulin domain

RNA

  1. XR_006936872.1 RNA Sequence

  2. XR_006936870.1 RNA Sequence

  3. XR_005855580.2 RNA Sequence

  4. XR_006936871.1 RNA Sequence

  5. XR_006936869.1 RNA Sequence

  6. XR_005855579.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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