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CAPN5 calpain 5 [ Gallus gallus (chicken) ]

Gene ID: 419086, updated on 5-Mar-2024

Summary

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Official Symbol
CAPN5provided by CGNC
Official Full Name
calpain 5provided by CGNC
Primary source
CGNC:479
See related
Ensembl:ENSGALG00010002160
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
calpain-5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (193134311..193184474, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (193204632..193254874, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 2 Neighboring gene myosin VIIA Neighboring gene olfactory marker protein Neighboring gene alkaline ceramidase 3 Neighboring gene tsukushi, small leucine rich proteoglycan

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    193134311..193184474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_417278.7 → XP_417278.2  calpain-5

    UniProtKB/TrEMBL
    A0A8V0X8G8
    Related
    ENSGALP00010002924.1, ENSGALT00010004853.1
    Conserved Domains (3) summary
    cd04046
    Location:514 → 639
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 340
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:360 → 487
    Calpain_III; Calpain large subunit, domain III

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    193204632..193254874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040657600.2 → XP_040513534.1  calpain-5

    UniProtKB/TrEMBL
    A0A8V0X8G8
    Conserved Domains (3) summary
    cd04046
    Location:514 → 639
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 340
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:360 → 487
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
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