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PTPN12 protein tyrosine phosphatase, non-receptor type 12 [ Gallus gallus (chicken) ]

Gene ID: 417725, updated on 3-Apr-2024

Summary

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Symbol
PTPN12provided by CGNC
Full Name
protein tyrosine phosphatase, non-receptor type 12provided by CGNC
Primary source
CGNC:6308
See related
Ensembl:ENSGALG00010009407
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (12769540..12839922, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (12907320..12977614, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 60 Neighboring gene round spermatid basic protein 1 like Neighboring gene uncharacterized LOC107051625 Neighboring gene gamma-secretase activating protein Neighboring gene coiled-coil domain containing 146 Neighboring gene fibrinogen like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables non-membrane spanning protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 12
XP_040518040.1
XP_046765943.1
XP_046765944.1
XP_046800934.1
XP_046800938.1
XP_415970.7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12769540..12839922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_415970.8 → XP_415970.7  tyrosine-protein phosphatase non-receptor type 12 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y5X8
    Related
    ENSGALP00010012945.1, ENSGALT00010022473.1
    Conserved Domains (1) summary
    cd14604
    Location:2 → 298
    PTPc-N12; catalytic domain of tyrosine-protein phosphatase non-receptor type 12

  2. XM_046944978.1 → XP_046800934.1  tyrosine-protein phosphatase non-receptor type 12 isoform X2

  3. XM_046944982.1 → XP_046800938.1  tyrosine-protein phosphatase non-receptor type 12 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12907320..12977614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662106.2 → XP_040518040.1  tyrosine-protein phosphatase non-receptor type 12 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y5X8
    Conserved Domains (1) summary
    cd14604
    Location:2 → 298
    PTPc-N12; catalytic domain of tyrosine-protein phosphatase non-receptor type 12

  2. XM_046909987.1 → XP_046765943.1  tyrosine-protein phosphatase non-receptor type 12 isoform X2

  3. XM_046909988.1 → XP_046765944.1  tyrosine-protein phosphatase non-receptor type 12 isoform X3

Nucleotide Protein
Heading Accession and Version

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