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RXRA retinoid X receptor alpha [ Gallus gallus (chicken) ]

Gene ID: 417143, updated on 3-Apr-2024

Summary

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Symbol
RXRAprovided by CGNC
Full Name
retinoid X receptor alphaprovided by CGNC
Primary source
CGNC:1890
See related
Ensembl:ENSGALG00010028422
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (7885032..7962921)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (7295986..7374007)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene ly6/PLAUR domain-containing protein 1-like Neighboring gene uncharacterized LOC101750481 Neighboring gene uncharacterized LOC107052216 Neighboring gene uncharacterized LOC107052217 Neighboring gene uncharacterized LOC417142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cholesterol secretion and homeostasis in chondrocytes: a liver X receptor and retinoid X receptor heterodimer mediates apolipoprotein A1 expression. Gentili C, et al. Matrix Biol, 2005 Feb. PMID 15749000

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. liver X receptor and retinoid X receptor heterodimer mediates apolipoprotein A1 expression
    Title: Cholesterol secretion and homeostasis in chondrocytes: a liver X receptor and retinoid X receptor heterodimer mediates apolipoprotein A1 expression.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7885032..7962921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003642291.6 → XP_003642339.2  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5P2B5, A0A8V1AG94
    Related
    ENSGALP00010042285.1, ENSGALT00010068843.1
    Conserved Domains (3) summary
    cd06943
    Location:234 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:138 → 214
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:18 → 132
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_046901862.1 → XP_046757818.1  retinoic acid receptor RXR-alpha isoform X4

  3. XM_046901861.1 → XP_046757817.1  retinoic acid receptor RXR-alpha isoform X3

  4. XM_015279790.3 → XP_015135276.1  retinoic acid receptor RXR-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8V1A8J8, A0A8V1AG94
    Related
    ENSGALP00010042279.1, ENSGALT00010068837.1
    Conserved Domains (3) summary
    cd06943
    Location:232 → 443
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:136 → 212
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:16 → 129
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7295986..7374007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040686122.2 → XP_040542056.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5P2B5, A0A8V1AG94
    Conserved Domains (3) summary
    cd06943
    Location:234 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:138 → 214
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:18 → 132
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_040686123.1 → XP_040542057.1  retinoic acid receptor RXR-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8V1A8J8, A0A8V1AG94
    Conserved Domains (3) summary
    cd06943
    Location:232 → 443
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:136 → 212
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:16 → 129
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
Nucleotide Protein
Heading Accession and Version

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