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SCARB1 scavenger receptor class B member 1 [ Gallus gallus (chicken) ]

Gene ID: 416814, updated on 5-Mar-2024

Summary

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Symbol
SCARB1provided by CGNC
Full Name
scavenger receptor class B member 1provided by CGNC
Primary source
CGNC:2183
See related
Ensembl:ENSGALG00010021011
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (4530835..4547032)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (4540641..4556817)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051607 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ubiquitin B Neighboring gene nuclear receptor corepressor 2 Neighboring gene microRNA 1636 Neighboring gene refilin A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of apoptotic cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4530835..4547032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275627.4 → XP_015131113.1  scavenger receptor class B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A1D5PMI6, A0A8V0ZGQ6
    Related
    ENSGALP00010030011.1, ENSGALT00010050820.1
    Conserved Domains (1) summary
    pfam01130
    Location:23 → 443
    CD36; CD36 family

  2. XM_415106.6 → XP_415106.2  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TTF7, A0A8V0ZGQ6
    Related
    ENSGALP00010030016.1, ENSGALT00010050825.1
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  3. XM_015275624.4 → XP_015131110.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZGQ6, F1NAN9
    Related
    ENSGALP00010029998.1, ENSGALT00010050807.1
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  4. XM_015275625.3 → XP_015131111.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZGQ6, F1NAN9
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  5. XM_015275626.3 → XP_015131112.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZGQ0, A0A8V0ZGQ6
    Related
    ENSGALP00010030001.1, ENSGALT00010050810.1
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4540641..4556817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684395.2 → XP_040540329.1  scavenger receptor class B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A1D5PMI6, A0A8V0ZGQ6
    Conserved Domains (1) summary
    pfam01130
    Location:23 → 443
    CD36; CD36 family

  2. XM_040684391.2 → XP_040540325.1  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2TTF7, A0A8V0ZGQ6
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  3. XM_040684393.2 → XP_040540327.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZGQ6, F1NAN9
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  4. XM_040684392.2 → XP_040540326.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZGQ6, F1NAN9
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family

  5. XM_040684394.2 → XP_040540328.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZGQ0, A0A8V0ZGQ6
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 461
    CD36; CD36 family
Nucleotide Protein
Heading Accession and Version

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