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snrpd3 small nuclear ribonucleoprotein D3 polypeptide [ Danio rerio (zebrafish) ]

Gene ID: 415171, updated on 27-Mar-2024

Summary

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Official Symbol
snrpd3provided by ZNC
Official Full Name
small nuclear ribonucleoprotein D3 polypeptideprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-55
See related
Ensembl:ENSDARG00000013800 AllianceGenome:ZFIN:ZDB-GENE-040625-55
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:86943
Summary
Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (30737249..30745586)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (30733744..30736354)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene chromosome 8 C22orf15 homolog Neighboring gene ureidopropionase, beta Neighboring gene guanylyl cyclase domain containing 1 Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 4b Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 7 Neighboring gene uncharacterized LOC101886486 Neighboring gene uncharacterized LOC101886427

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A novel chemical screening strategy in zebrafish identifies common pathways in embryogenesis and rhabdomyosarcoma development. Le X, et al. Development, 2013 Jun. PMID 23615277, Free PMC Article
  2. Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110. Trede NS, et al. Proc Natl Acad Sci U S A, 2007 Apr 17. PMID 17416673, Free PMC Article
  3. Forward Genetic Screens in Zebrafish Identify Pre-mRNA-Processing Pathways Regulating Early T Cell Development. Iwanami N, et al. Cell Rep, 2016 Nov 22. PMID 27880902, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small nuclear ribonucleoprotein Sm D3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002081.1 → NP_001002081.1  small nuclear ribonucleoprotein Sm D3

    See identical proteins and their annotated locations for NP_001002081.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071554
    UniProtKB/TrEMBL
    Q6IQ56
    Related
    ENSDARP00000011226.5, ENSDART00000018475.7
    Conserved Domains (1) summary
    cd01721
    Location:6 → 75
    Sm_D3; Sm protein D3

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    30737249..30745586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478237.1 → XP_021333912.1  small nuclear ribonucleoprotein Sm D3 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PQT7
    Conserved Domains (1) summary
    cd01721
    Location:6 → 75
    Sm_D3; Sm protein D3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394731.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    340824..343434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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