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srrm1 serine/arginine repetitive matrix 1 [ Danio rerio (zebrafish) ]

Gene ID: 406751, updated on 27-Mar-2024

Summary

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Official Symbol
srrm1provided by ZNC
Official Full Name
serine/arginine repetitive matrix 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2789
See related
Ensembl:ENSDARG00000001244 AllianceGenome:ZFIN:ZDB-GENE-040426-2789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63802; wu:fb34f04; wu:fb38b06
Summary
Predicted to act upstream of or within mRNA processing. Orthologous to human SRRM1 (serine and arginine repetitive matrix 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (25426058..25440353)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (25407680..25421962)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene zgc:154055 Neighboring gene L-threonine dehydrogenase 2 Neighboring gene chloride intracellular channel 4 Neighboring gene crystallin beta-gamma domain containing 1a Neighboring gene uncharacterized LOC103909042

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons. Torres-Méndez A, et al. Nat Ecol Evol, 2019 Apr. PMID 30833759
  2. Processing of fish Ig heavy chain transcripts: diverse splicing patterns and unusual nonsense mediated decay. Quiniou SM, et al. Dev Comp Immunol, 2011 Sep. PMID 21168434
  3. Reconstruction of a 450-My-old ancestral vertebrate protokaryotype. Kohn M, et al. Trends Genet, 2006 Apr. PMID 16517001
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365281.1 → NP_001352210.1  serine/arginine repetitive matrix protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CU972452
    UniProtKB/TrEMBL
    A0A8M2B5D0, E7F1X7, Q6PEG8
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl28033
    Location:469 → 786
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. NM_213442.2 → NP_998607.2  serine/arginine repetitive matrix protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CU972452
    UniProtKB/TrEMBL
    Q6PEG8
    Related
    ENSDARP00000124762.1, ENSDART00000149241.3
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl28033
    Location:469 → 786
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    25426058..25440353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158502.3 → XP_005158559.1  serine/arginine repetitive matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    E7F1X7
    Related
    ENSDARP00000111346.1, ENSDART00000121848.3
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl28033
    Location:469 → 786
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_005158503.1 → XP_005158560.1  serine/arginine repetitive matrix protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005158560.1

    UniProtKB/TrEMBL
    A0A8M2B4V6, Q6PEG8
    Conserved Domains (2) summary
    pfam01480
    Location:1 → 32
    PWI; PWI domain
    pfam15087
    Location:487 → 609
    DUF4551; Protein of unknown function (DUF4551)
Nucleotide Protein Strain
Heading Accession and Version

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