U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rps11 ribosomal protein S11 [ Danio rerio (zebrafish) ]

Gene ID: 406686, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
rps11provided by ZNC
Official Full Name
ribosomal protein S11provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2701
See related
Ensembl:ENSDARG00000053058 AllianceGenome:ZFIN:ZDB-GENE-040426-2701
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56293; wu:fa91c09; wu:fb34b11
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rps11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37787275..37789235)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37645417..37647377)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene apoptosis regulator BAX-like Neighboring gene BCL2 associated X, apoptosis regulator a Neighboring gene homologous recombination factor with OB-fold Neighboring gene acid-sensing (proton-gated) ion channel 2 Neighboring gene uncharacterized LOC101885398

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Intestinal Cetobacterium and acetate modify glucose homeostasis via parasympathetic activation in zebrafish. Wang A, et al. Gut Microbes, 2021 Jan-Dec. PMID 33840371, Free PMC Article
  2. Rad21 Haploinsufficiency Prevents ALT-Associated Phenotypes in Zebrafish Brain Tumors. Idilli AI, et al. Genes (Basel), 2020 Nov 30. PMID 33266037, Free PMC Article
  3. Automated in vivo screen in zebrafish identifies Clotrimazole as targeting a metabolic vulnerability in a melanoma model. Precazzini F, et al. Dev Biol, 2020 Jan 15. PMID 30998907
  4. Gasdermin E mediates pyroptotic cell death of neutrophils and macrophages in a zebrafish model of chronic skin inflammation. Lozano-Gil JM, et al. Dev Comp Immunol, 2022 Jul. PMID 35341794
  5. Lactate Induces the Expressions of MCT1 and HCAR1 to Promote Tumor Growth and Progression in Glioblastoma. Longhitano L, et al. Front Oncol, 2022. PMID 35574309, Free PMC Article

See all (49) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
40S ribosomal protein S11

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213377.1 → NP_998542.1  40S ribosomal protein S11

    See identical proteins and their annotated locations for NP_998542.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046054
    UniProtKB/TrEMBL
    B0JZI8, Q7ZV05
    Related
    ENSDARP00000069513.5, ENSDART00000075028.6
    Conserved Domains (3) summary
    PTZ00241
    Location:1 → 159
    PTZ00241; 40S ribosomal protein S11; Provisional
    pfam00366
    Location:76 → 145
    Ribosomal_S17; Ribosomal protein S17
    pfam16205
    Location:5 → 74
    Ribosomal_S17_N; Ribosomal_S17 N-terminal

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    37787275..37789235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.