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rps21 ribosomal protein S21 [ Danio rerio (zebrafish) ]

Gene ID: 394166, updated on 27-Mar-2024

Summary

Official Symbol
rps21provided by ZNC
Official Full Name
ribosomal protein S21provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1102
See related
Ensembl:ENSDARG00000025850 AllianceGenome:ZFIN:ZDB-GENE-040426-1102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56642; zgc:86816
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (9220460..9228578)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (9285490..9293608)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 2b Neighboring gene uncharacterized LOC110438310 Neighboring gene acyl-CoA synthetase short chain family member 2 Neighboring gene microtubule crosslinking factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Clone Names

  • MGC56642, MGC86816

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small ribosomal subunit protein eS21
Names
40S ribosomal protein S21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201191.1NP_957485.1  small ribosomal subunit protein eS21

    See identical proteins and their annotated locations for NP_957485.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049056
    UniProtKB/Swiss-Prot
    Q7ZUG5
    Related
    ENSDARP00000031181.4, ENSDART00000033663.6
    Conserved Domains (1) summary
    pfam01249
    Location:176
    Ribosomal_S21e; Ribosomal protein S21e

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    9220460..9228578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)