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rpl28 ribosomal protein L28 [ Danio rerio (zebrafish) ]

Gene ID: 394036, updated on 27-Mar-2024

Summary

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Official Symbol
rpl28provided by ZNC
Official Full Name
ribosomal protein L28provided by ZNC
Primary source
ZFIN:ZDB-GENE-040930-10
See related
Ensembl:ENSDARG00000005791 AllianceGenome:ZFIN:ZDB-GENE-040930-10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rpl28l; zgc:66289
Summary
Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL28 (ribosomal protein L28). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rpl28 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (51885378..51889734, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (52026724..52031078, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438019 Neighboring gene mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like Neighboring gene collagen, type XXVII, alpha 1a Neighboring gene microRNA mir-455-2 Neighboring gene uncharacterized LOC110438008 Neighboring gene E3 ubiquitin-protein ligase hyd-like Neighboring gene uncharacterized LOC108179656 Neighboring gene SEC16 homolog A, endoplasmic reticulum export factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Ribosomal protein gene knockdown causes developmental defects in zebrafish. Uechi T, et al. PLoS One, 2006 Dec 20. PMID 17183665, Free PMC Article
  2. Multiple ribosomal proteins are expressed at high levels in developing zebrafish endoderm and are required for normal exocrine pancreas development. Provost E, et al. Zebrafish, 2013 Jun. PMID 23697888, Free PMC Article
  3. Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish. Lai K, et al. Dev Dyn, 2009 Jan. PMID 19097187, Free PMC Article
  4. Microarray gene expression profiling during the segmentation phase of zebrafish development. Linney E, et al. Comp Biochem Physiol C Toxicol Pharmacol, 2004 Jul. PMID 15533793
  5. On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio. Wu CC, et al. PLoS One, 2014. PMID 24926785, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC66289

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chordate embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
60S ribosomal protein L28
NP_957355.1
XP_021322326.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201061.2 → NP_957355.1  60S ribosomal protein L28

    See identical proteins and their annotated locations for NP_957355.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055584
    UniProtKB/TrEMBL
    A0A286YBP4, Q7SXI9
    Related
    ENSDARP00000024189.5, ENSDART00000012055.7
    Conserved Domains (1) summary
    pfam01778
    Location:6 → 118
    Ribosomal_L28e; Ribosomal L28e protein family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    51885378..51889734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466651.1 → XP_021322326.1  60S ribosomal protein L28 isoform X1

    UniProtKB/TrEMBL
    A0A286YBP4, A0A8M9PJC8, F1QFV6
    Conserved Domains (1) summary
    pfam01778
    Location:6 → 118
    Ribosomal_L28e; Ribosomal L28e protein family
Nucleotide Protein
Heading Accession and Version

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