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rpsa ribosomal protein SA [ Danio rerio (zebrafish) ]

Gene ID: 394027, updated on 27-Mar-2024

Summary

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Official Symbol
rpsaprovided by ZNC
Official Full Name
ribosomal protein SAprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-811
See related
Ensembl:ENSDARG00000019181 AllianceGenome:ZFIN:ZDB-GENE-040426-811
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lamr1; zgc:55831; zgc:77824
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal small subunit assembly. Predicted to be located in several cellular components, including nucleus; plasma membrane; and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in eye. Orthologous to human RPSA (ribosomal protein SA). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (7713342..7720332, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (7556173..7563163, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 56 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene solute carrier family 25 member 38b Neighboring gene myosin, heavy chain 9a, non-muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Differential protein profile in zebrafish (Danio rerio) brain under the joint exposure of methyl parathion and cadmium. Ling XP, et al. Environ Sci Pollut Res Int, 2012 Nov. PMID 22767353
  2. Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis. He WX, et al. RNA, 2018 Dec. PMID 30185624, Free PMC Article
  3. Proteomic analysis of arsenic-exposed zebrafish (Danio rerio) identifies altered expression in proteins involved in fibrosis and lipid uptake in a gender-specific manner. Carlson P, et al. Toxicol Sci, 2013 Jul. PMID 23570992
  4. Many ribosomal protein mutations are associated with growth impairment and tumor predisposition in zebrafish. Lai K, et al. Dev Dyn, 2009 Jan. PMID 19097187, Free PMC Article
  5. Analysis of the zebrafish proteome during embryonic development. Lucitt MB, et al. Mol Cell Proteomics, 2008 May. PMID 18212345, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC55831

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables laminin binding IEA
Inferred from Electronic Annotation
more info
  
enables laminin receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein uS2
Names
laminin receptor 1 (ribosomal protein SA)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201052.1 → NP_957346.1  small ribosomal subunit protein uS2

    See identical proteins and their annotated locations for NP_957346.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044504
    UniProtKB/Swiss-Prot
    Q803F6
    UniProtKB/TrEMBL
    B2GNT1
    Related
    ENSDARP00000123183.2, ENSDART00000135945.4
    Conserved Domains (3) summary
    PTZ00254
    Location:1 → 249
    PTZ00254; 40S ribosomal protein SA; Provisional
    TIGR01012
    Location:10 → 206
    uS2_euk_arch; ribosomal protein uS2, eukaryotic/archaeal form
    pfam16122
    Location:202 → 308
    40S_SA_C; 40S ribosomal protein SA C-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    7713342..7720332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q803F6.1 GenPept UniProtKB/Swiss-Prot:Q803F6

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